Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   SO574_RS04585 Genome accession   NZ_CP140102
Coordinates   976538..977941 (+) Length   467 a.a.
NCBI ID   WP_322803843.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 971538..982941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS04580 (SO574_04580) uvrB 974146..976176 (+) 2031 WP_322803842.1 excinuclease ABC subunit UvrB -
  SO574_RS04585 (SO574_04585) luxO 976538..977941 (+) 1404 WP_322803843.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  SO574_RS04590 (SO574_04590) luxU 977938..978282 (+) 345 WP_322803844.1 quorum-sensing phosphorelay protein LuxU -
  SO574_RS04595 (SO574_04595) - 978359..979252 (-) 894 WP_322803845.1 YvcK family protein -
  SO574_RS04600 (SO574_04600) moaA 979548..980537 (+) 990 WP_322803846.1 GTP 3',8-cyclase MoaA -
  SO574_RS04605 (SO574_04605) moaB 980634..981146 (+) 513 WP_128811251.1 molybdenum cofactor biosynthesis protein B -
  SO574_RS04610 (SO574_04610) moaC 981173..981649 (+) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  SO574_RS04615 (SO574_04615) moaD 981649..981906 (+) 258 WP_322803847.1 molybdopterin synthase sulfur carrier subunit -
  SO574_RS04620 (SO574_04620) moaE 981908..982363 (+) 456 WP_128811249.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51853.31 Da        Isoelectric Point: 6.6600

>NTDB_id=912511 SO574_RS04585 WP_322803843.1 976538..977941(+) (luxO) [Vibrio alfacsensis strain VA-1]
MQHKPDGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGREAIDSLNHRTPDLILLDLRLPDMTGMDVLHKVKDSH
PSVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEANNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQDVIDKFNRYEWPGNVRQLQNVLRNIVVLNNGKEITIDMLPPPLNMPLVGSA
IVSPMPQKAITASDITPLWMTEKEAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWGTKEEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=912511 SO574_RS04585 WP_322803843.1 976538..977941(+) (luxO) [Vibrio alfacsensis strain VA-1]
ATGCAACATAAACCAGATGGTCAAAAGTCTCGTTATCTTTTGATGGTTGAAGATACCGCGTCTGTCGCCGCATTATACCG
TTCATACCTTACGCCTCTTGGCATCGACATTAACATTGTCGGCACTGGCCGAGAAGCGATCGACAGTTTAAATCATCGCA
CCCCTGACCTTATTCTCTTAGATCTTCGTCTGCCAGATATGACGGGAATGGATGTGCTACATAAGGTCAAAGATAGTCAC
CCAAGTGTGCCTGTTATCTTCATGACTGCTCACGGCTCTATTGATACCGCAGTAGAAGCGATGCGTCATGGTTCTCAAGA
TTTCCTGATCAAACCATGTGAAGCAGACCGATTACGCGTTACCGTAAATAATGCGATTCGCAAAGCCACTAAGCTGAAAA
ACGAAGCTAACAACCCGGGCAATCAAAGCTATCAAGGTTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGGACT
ATTGACTCCGCAGCCAGTAGTAAAGCGAGTATCTTTATCACTGGTGAGAGTGGTACGGGTAAAGAAGTGTGTGCTGAAGC
CATTCACGCAGCGAGTAAACGCGGTGATAAGCCATTTATTGCCATTAACTGTGCAGCCATTCCAAAAGACCTCATTGAGA
GCGAGTTGTTTGGCCATGTAAAAGGTGCGTTTACTGGCGCTGCCAATGATCGCCAAGGTGCCGCAGAACTCGCCGATGGT
GGTACCTTGTTCCTTGATGAGTTGTGTGAAATGGACTTGGATTTACAAACCAAGCTTTTGCGATTCATCCAAACGGGGAC
ATTCCAAAAAGTGGGTTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTTGTATGTGCGACGAACCGAGACCCATGGAAAG
AGGTACAAGAAGGGCGCTTTCGTGAAGATTTGTATTACCGATTATATGTGATTCCTTTGCACCTACCACCACTGAGAGAA
CGTGGTGAGGATGTTATCGAAATCGCTTATTCGTTGTTAGGTTACATGTCTCATGAAGAAGGTAAGAACTTTGTTCGTTT
CTCTCAAGACGTGATTGATAAATTTAATCGCTATGAGTGGCCAGGAAACGTTCGTCAATTGCAAAACGTTCTGAGGAATA
TCGTGGTGCTAAATAATGGTAAAGAGATTACCATCGATATGCTACCGCCTCCGCTTAATATGCCGCTTGTTGGCAGTGCC
ATTGTAAGCCCAATGCCCCAAAAGGCGATAACCGCGTCAGACATTACCCCGCTATGGATGACTGAAAAAGAAGCCATTGA
GCAGGCGATCAAGGCTTGTGATGGGAATATTCCTAGAGCCGCGGGTTATTTAGATGTCAGCCCATCAACGATTTATCGTA
AGCTCCAAGCTTGGGGTACGAAAGAAGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

84.116

95.717

0.805