Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   U2P90_RS17200 Genome accession   NZ_CP140098
Coordinates   3528825..3529382 (+) Length   185 a.a.
NCBI ID   WP_322473090.1    Uniprot ID   -
Organism   Deinococcus sp. AB2017081     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3523825..3534382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2P90_RS17175 (U2P90_17175) - 3523863..3524768 (+) 906 WP_295820997.1 carbohydrate ABC transporter permease -
  U2P90_RS17180 (U2P90_17180) - 3524770..3525645 (+) 876 WP_295820995.1 carbohydrate ABC transporter permease -
  U2P90_RS17185 (U2P90_17185) - 3525754..3526836 (+) 1083 WP_322473088.1 LacI family DNA-binding transcriptional regulator -
  U2P90_RS17190 (U2P90_17190) menC 3526841..3527950 (+) 1110 WP_322473089.1 o-succinylbenzoate synthase -
  U2P90_RS17195 (U2P90_17195) - 3528007..3528756 (+) 750 WP_322474719.1 acyl-CoA acyltransferase -
  U2P90_RS17200 (U2P90_17200) ddrB 3528825..3529382 (+) 558 WP_322473090.1 single-stranded DNA-binding protein Machinery gene
  U2P90_RS17205 (U2P90_17205) - 3529440..3529859 (-) 420 WP_295820987.1 hypothetical protein -
  U2P90_RS17210 (U2P90_17210) - 3530167..3530835 (-) 669 WP_295820985.1 metallophosphoesterase -
  U2P90_RS17215 (U2P90_17215) - 3530958..3531524 (+) 567 WP_322473091.1 GNAT family N-acetyltransferase -
  U2P90_RS17220 (U2P90_17220) rocF 3531639..3532544 (+) 906 WP_322473092.1 arginase -
  U2P90_RS17225 (U2P90_17225) - 3532599..3533174 (-) 576 WP_295820980.1 DinB family protein -
  U2P90_RS17230 (U2P90_17230) - 3533171..3534187 (-) 1017 WP_295820979.1 tRNA dihydrouridine synthase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20388.75 Da        Isoelectric Point: 7.0763

>NTDB_id=912500 U2P90_RS17200 WP_322473090.1 3528825..3529382(+) (ddrB) [Deinococcus sp. AB2017081]
MLHIEFLTDLGARVTVDVDSADKLLDVQRQYGRLGWTSGEVPTGGYQFPHDNEPDFDWTLIGARKWTSPDGEELVIHKGH
AYRRRELEAVDSRKMKLPAAVKYSRGAKSTDPDHLREKSDGEFEYVTLAIFRGGKRQERYATPGGGRPASAPHAARPAPA
RPAPGGATATAPRPPVQVTEDETPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=912500 U2P90_RS17200 WP_322473090.1 3528825..3529382(+) (ddrB) [Deinococcus sp. AB2017081]
GTGTTACACATCGAATTTCTGACGGATCTCGGGGCACGGGTCACCGTGGACGTGGACAGCGCCGACAAGCTGCTGGACGT
GCAGCGCCAGTACGGTCGCCTGGGCTGGACGAGCGGCGAGGTGCCCACCGGCGGCTATCAGTTCCCGCACGACAACGAGC
CCGACTTCGACTGGACGCTGATCGGCGCGCGGAAGTGGACGAGCCCCGACGGCGAGGAACTCGTCATCCACAAGGGCCAC
GCGTACCGCCGCCGTGAGCTGGAGGCCGTGGACAGCCGCAAGATGAAGCTGCCGGCCGCCGTGAAGTACTCGCGTGGAGC
CAAGAGCACCGATCCCGACCACCTGCGCGAGAAATCCGACGGCGAGTTCGAGTACGTCACCCTGGCGATCTTCCGGGGCG
GCAAGCGCCAGGAGCGCTACGCCACCCCCGGCGGCGGACGTCCCGCGTCGGCCCCCCACGCGGCCCGGCCTGCGCCCGCC
CGCCCGGCTCCCGGCGGCGCGACCGCCACTGCTCCCCGCCCCCCGGTTCAGGTGACCGAGGACGAAACGCCGTTCTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

73.099

92.432

0.676