Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   L6411_RS07490 Genome accession   NZ_AP025333
Coordinates   1560490..1561539 (-) Length   349 a.a.
NCBI ID   WP_156010821.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-189     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1555490..1566539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6411_RS07470 (GUT189_14370) nadE 1556472..1557296 (+) 825 WP_155971007.1 ammonia-dependent NAD(+) synthetase -
  L6411_RS07475 (GUT189_14380) - 1558067..1558585 (-) 519 WP_120172018.1 VanZ family protein -
  L6411_RS07480 (GUT189_14390) rlmN 1558582..1559694 (-) 1113 WP_024533152.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  L6411_RS07485 (GUT189_14400) - 1559703..1560359 (-) 657 WP_155964235.1 YutD family protein -
  L6411_RS07490 (GUT189_14410) sepM 1560490..1561539 (-) 1050 WP_156010821.1 SepM family pheromone-processing serine protease Regulator
  L6411_RS07495 (GUT189_14420) coaD 1561526..1562014 (-) 489 WP_024533097.1 pantetheine-phosphate adenylyltransferase -
  L6411_RS07500 (GUT189_14430) rsmD 1562004..1562543 (-) 540 WP_120172021.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  L6411_RS07505 (GUT189_14440) - 1563016..1563741 (-) 726 WP_024533099.1 hypothetical protein -
  L6411_RS07510 (GUT189_14450) - 1563799..1564185 (-) 387 WP_120172023.1 rhodanese-like domain-containing protein -
  L6411_RS07515 (GUT189_14460) - 1564185..1564403 (-) 219 WP_024533101.1 YqgQ family protein -
  L6411_RS07520 (GUT189_14470) - 1564715..1565317 (-) 603 WP_120172024.1 response regulator transcription factor -
  L6411_RS07525 (GUT189_14480) - 1565314..1566378 (-) 1065 WP_155964939.1 sensor histidine kinase -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 37557.77 Da        Isoelectric Point: 4.7927

>NTDB_id=91250 L6411_RS07490 WP_156010821.1 1560490..1561539(-) (sepM) [Streptococcus ruminantium strain GUT-189]
MKKNRKLLLITSIVLGTLLIWFTVFVPLPYYLESPGGAADIRQVLTVNNQVDEKEGSYNFTYVSVQQATALQLLAAQFDP
HTSVRSAEEMAGGANSAEYFRIARFYMETSQNMAKYQGLTLAGKEANMKFFGVYVLNLAEDSTFKSILNIADTVVSINGK
TFESSPDLIKYVSGLELGSDVIVGYISDGEEKSAKGKIIKLANGKNGIGIGLVDHTEVQSSVPIDFQTGNIGGPSAGLMF
TLAIYTQLADPDLRDGRMIAGTGTIEKDGKVGDIGGADKKVLSAAKAGASIFFVPNNPVDEAILKLNPNAKTNYEEAKES
AEKAGVDIEIVPVQTVQDAIDYLKKTKSE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=91250 L6411_RS07490 WP_156010821.1 1560490..1561539(-) (sepM) [Streptococcus ruminantium strain GUT-189]
ATGAAAAAAAATAGAAAACTACTCTTAATCACATCCATTGTTTTAGGAACTCTTTTGATTTGGTTTACTGTCTTTGTTCC
CCTACCTTATTATCTAGAAAGTCCTGGAGGAGCTGCTGATATTCGTCAAGTATTAACAGTAAATAATCAAGTCGACGAGA
AAGAGGGATCTTACAATTTTACTTATGTGTCTGTTCAGCAAGCTACAGCTTTGCAACTGTTAGCAGCCCAGTTTGACCCG
CATACAAGTGTGCGATCAGCCGAAGAGATGGCAGGTGGTGCCAATAGTGCAGAGTACTTCCGTATCGCTCGCTTCTACAT
GGAAACTTCACAGAATATGGCCAAATACCAAGGGTTAACCTTGGCAGGAAAAGAAGCGAATATGAAGTTCTTTGGCGTAT
ATGTTCTCAACTTGGCAGAAGATTCTACTTTTAAAAGTATTCTTAATATTGCTGATACAGTTGTTAGTATCAACGGAAAA
ACCTTTGAATCATCACCAGATTTAATCAAGTATGTTAGTGGTTTAGAATTGGGCAGTGATGTTATAGTTGGCTATATCAG
CGATGGAGAAGAAAAATCGGCCAAGGGTAAGATTATTAAATTAGCTAATGGTAAGAATGGTATTGGAATTGGTCTTGTTG
ACCATACGGAGGTTCAAAGCTCAGTTCCAATTGATTTCCAAACAGGTAATATAGGTGGACCAAGTGCAGGACTGATGTTC
ACTTTAGCTATCTATACTCAATTGGCAGATCCTGATTTGCGCGATGGACGGATGATTGCAGGAACGGGTACCATAGAAAA
AGATGGTAAGGTTGGAGATATTGGTGGAGCAGATAAGAAGGTTTTATCAGCGGCTAAAGCGGGAGCAAGTATCTTCTTTG
TTCCAAATAATCCAGTTGATGAAGCCATTTTGAAGCTGAATCCAAATGCCAAAACTAATTATGAAGAAGCGAAAGAATCC
GCTGAGAAGGCGGGTGTGGATATTGAAATTGTCCCTGTCCAGACTGTTCAAGACGCTATTGATTATCTTAAGAAGACAAA
GAGCGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.807

99.427

0.605


Multiple sequence alignment