Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   U2P90_RS12460 Genome accession   NZ_CP140098
Coordinates   2560089..2561309 (+) Length   406 a.a.
NCBI ID   WP_322472367.1    Uniprot ID   -
Organism   Deinococcus sp. AB2017081     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2555089..2566309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2P90_RS12440 (U2P90_12440) gatA 2556425..2557879 (-) 1455 WP_322472364.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  U2P90_RS12445 (U2P90_12445) - 2557950..2558711 (-) 762 WP_295815356.1 DUF4388 domain-containing protein -
  U2P90_RS12450 (U2P90_12450) scpB 2558843..2559370 (-) 528 WP_322472365.1 SMC-Scp complex subunit ScpB -
  U2P90_RS12455 (U2P90_12455) - 2559367..2560002 (-) 636 WP_322472366.1 L-threonylcarbamoyladenylate synthase -
  U2P90_RS12460 (U2P90_12460) pilC 2560089..2561309 (+) 1221 WP_322472367.1 type II secretion system F family protein Machinery gene
  U2P90_RS12465 (U2P90_12465) - 2561380..2561778 (-) 399 WP_322472368.1 M67 family metallopeptidase -
  U2P90_RS12470 (U2P90_12470) - 2561882..2565073 (+) 3192 WP_322472369.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44426.32 Da        Isoelectric Point: 9.6213

>NTDB_id=912498 U2P90_RS12460 WP_322472367.1 2560089..2561309(+) (pilC) [Deinococcus sp. AB2017081]
MPVFEYRVRDRSGKVLKSQMEADSLAQVRDALRAKNLMIVEIKPPKGGLNADVKIPFLSDRPPSLKQVAIFSKQMATLIN
AGVPLVQSLAILQRQMEHKGFQEIVKAMRTDVESGTPLSETLVKYPKLFNRLYVNLVRAGETSGTLDSVLERIAAFQEKD
LALRGKLKSALTYPVIVLIFAILITYFLLTTIVPQFAGILAQLNAPLPGITKVLMATSNFLQHGTLYILAIGITVTFLYR
WYYSTPKGRRVIDDVKLRIPIFGNLLQKSAISSFARTFGLLISSGVNIIESLEITKGTANNAIVEESIENAKNVVMVGDQ
MSSSLATSKIFPPMVVSMVAIGEETGSLDSMLDKVGDFYDREVDEAVEGMTAAIEPIMIVFLGGIVGTIVAGMFLPMFSI
IGSLSK

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=912498 U2P90_RS12460 WP_322472367.1 2560089..2561309(+) (pilC) [Deinococcus sp. AB2017081]
ATGCCCGTCTTCGAATACCGTGTGCGCGACCGCTCCGGGAAAGTGCTGAAATCCCAGATGGAGGCCGACTCGCTGGCGCA
GGTGCGTGACGCCCTGCGTGCGAAGAACCTCATGATCGTGGAGATCAAGCCGCCGAAGGGCGGGCTGAATGCCGACGTCA
AGATTCCCTTCCTGAGCGACCGCCCCCCGAGCCTGAAACAGGTGGCGATCTTCAGCAAGCAGATGGCCACGCTGATCAAC
GCCGGGGTGCCGCTCGTGCAGTCCCTGGCGATCCTCCAGCGTCAGATGGAACACAAGGGCTTTCAGGAGATCGTGAAGGC
CATGCGCACGGACGTCGAGAGCGGAACACCGCTGAGTGAGACCCTGGTCAAGTATCCCAAACTCTTCAACCGCCTGTATG
TCAACCTCGTTCGTGCGGGCGAGACCAGCGGGACGCTCGACTCGGTGCTGGAACGCATCGCGGCCTTCCAGGAAAAGGAT
CTCGCGCTGCGCGGCAAGCTCAAGAGTGCCCTCACGTACCCCGTCATCGTGCTGATCTTCGCCATCCTGATCACGTACTT
CCTGCTCACGACCATCGTGCCCCAGTTCGCCGGAATCCTGGCCCAGCTGAACGCCCCCCTGCCAGGCATCACGAAAGTGC
TGATGGCCACCTCCAACTTCCTCCAGCACGGCACGCTGTACATCCTCGCCATCGGAATCACCGTCACCTTCCTGTACCGC
TGGTACTACTCGACCCCGAAGGGTCGCCGTGTCATCGACGACGTCAAGCTCCGCATTCCTATCTTCGGAAACCTGCTCCA
GAAGAGCGCCATCAGCTCTTTTGCCAGAACCTTCGGTCTCCTGATCAGCTCCGGCGTGAACATCATCGAGAGCCTGGAGA
TCACCAAGGGCACGGCCAACAACGCCATCGTCGAGGAATCGATCGAGAATGCCAAGAACGTAGTCATGGTCGGTGACCAG
ATGAGCAGCAGTCTGGCGACCAGCAAGATCTTCCCACCCATGGTGGTCAGCATGGTCGCGATCGGTGAGGAGACGGGCTC
CCTGGACTCCATGCTCGACAAGGTGGGCGACTTCTATGACCGCGAGGTCGACGAGGCGGTCGAGGGAATGACCGCCGCGA
TCGAGCCGATCATGATCGTGTTCCTGGGCGGCATCGTGGGTACCATCGTGGCCGGGATGTTCCTCCCGATGTTCAGCATC
ATCGGCAGCCTGAGCAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

58.374

100

0.584