Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   U2P90_RS02205 Genome accession   NZ_CP140098
Coordinates   454753..455814 (+) Length   353 a.a.
NCBI ID   WP_295823393.1    Uniprot ID   -
Organism   Deinococcus sp. AB2017081     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 449753..460814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2P90_RS02180 (U2P90_02180) - 450000..450284 (+) 285 WP_322473609.1 hypothetical protein -
  U2P90_RS02185 (U2P90_02185) - 450328..451863 (+) 1536 WP_322473610.1 dihydrolipoamide acetyltransferase family protein -
  U2P90_RS02190 (U2P90_02190) - 452046..452504 (+) 459 WP_295819511.1 hypothetical protein -
  U2P90_RS02195 (U2P90_02195) - 452557..453216 (+) 660 WP_322473611.1 response regulator transcription factor -
  U2P90_RS02200 (U2P90_02200) - 453238..454638 (+) 1401 WP_322473612.1 sensor histidine kinase -
  U2P90_RS02205 (U2P90_02205) dprA 454753..455814 (+) 1062 WP_295823393.1 DNA-processing protein DprA Machinery gene
  U2P90_RS02210 (U2P90_02210) - 455837..456124 (-) 288 WP_295823385.1 hypothetical protein -
  U2P90_RS02215 (U2P90_02215) - 456142..457101 (+) 960 WP_322473613.1 NAD-dependent epimerase/dehydratase family protein -
  U2P90_RS02220 (U2P90_02220) dnaA 457229..458584 (+) 1356 WP_380102297.1 chromosomal replication initiator protein DnaA -
  U2P90_RS02225 (U2P90_02225) dnaN 458946..460028 (+) 1083 WP_295823077.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 36523.96 Da        Isoelectric Point: 6.3060

>NTDB_id=912487 U2P90_RS02205 WP_295823393.1 454753..455814(+) (dprA) [Deinococcus sp. AB2017081]
MADELLALLTLRFTPQLGPRRIESLRRHLGGARQVLAASLAELREVPGLEVKSVAAIGAAKAAELASAELEKAAGAGVTL
LGRGLPGYPDALEALSDPPPVLWVLGELPDLPAVPRAIGIVGTRAASPHALQLTRAVAGDLARADVVVVSGLARGIDTAA
HTATVEAGGVTVGVLGSGVNHIYPSENVPLSRRMTVISEYPLGTPPAQHHFPTRNRVIAALSAGSLVVEGELKSGSMITA
THALECGRTVFAVPGRAGDPRAAGPHRLIREGAVLTESAQDILDELGWGAAPAQPLPTLPPDQARTYAALTAPLTLDDLQ
AATGLTLPELQTALLMLNLQSLAEETGGRWARR

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=912487 U2P90_RS02205 WP_295823393.1 454753..455814(+) (dprA) [Deinococcus sp. AB2017081]
ATGGCCGATGAGCTGCTGGCCCTGCTGACGCTGCGATTCACGCCGCAGCTGGGGCCACGACGGATCGAGAGCCTGCGGCG
GCACCTCGGCGGCGCGCGGCAGGTGCTGGCCGCCAGCCTGGCCGAGTTGCGTGAGGTGCCCGGCCTGGAGGTGAAGAGCG
TGGCTGCCATCGGTGCTGCGAAGGCGGCGGAACTGGCAAGCGCCGAGCTGGAGAAGGCCGCCGGTGCCGGCGTGACCCTG
CTGGGGCGCGGCCTGCCCGGCTACCCGGACGCCCTGGAGGCCCTGAGTGATCCGCCGCCGGTGCTGTGGGTGCTGGGCGA
GCTACCGGACCTCCCGGCGGTGCCCCGCGCCATCGGGATCGTGGGAACCCGGGCCGCGAGTCCACACGCCCTCCAGCTGA
CCCGCGCGGTGGCCGGTGACCTCGCGCGGGCCGATGTGGTCGTCGTGAGCGGACTGGCGCGTGGCATCGACACGGCCGCA
CACACGGCCACCGTCGAGGCGGGTGGCGTGACGGTGGGGGTGCTGGGCAGCGGCGTGAACCACATCTATCCCAGCGAGAA
CGTGCCGCTGTCGCGCCGCATGACCGTCATCAGCGAGTACCCGCTGGGCACGCCACCCGCGCAGCACCACTTTCCCACCC
GCAACCGCGTGATCGCCGCCCTGAGTGCCGGCTCACTGGTCGTCGAGGGCGAACTGAAATCCGGCTCGATGATCACGGCC
ACCCACGCGCTGGAGTGCGGGCGCACGGTCTTCGCCGTGCCGGGGCGCGCCGGCGATCCCCGCGCTGCCGGCCCCCACCG
CCTGATCCGCGAGGGCGCGGTGCTCACCGAGTCTGCACAGGACATCCTGGACGAGCTGGGCTGGGGCGCGGCCCCCGCGC
AGCCCCTGCCCACGCTGCCGCCGGATCAGGCCCGCACCTACGCTGCGCTGACGGCGCCCCTCACGCTGGACGATCTCCAG
GCCGCGACCGGCCTGACCCTGCCCGAACTCCAGACCGCGCTGCTGATGCTCAACCTCCAGAGTCTGGCCGAGGAGACCGG
CGGACGCTGGGCGCGGCGCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(290-348)

DNA recombination-mediator protein A (DNA_processg_A)

(76-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

71.225

99.433

0.708