Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   U2P90_RS01350 Genome accession   NZ_CP140098
Coordinates   283906..284319 (+) Length   137 a.a.
NCBI ID   WP_322473462.1    Uniprot ID   -
Organism   Deinococcus sp. AB2017081     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 278906..289319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2P90_RS01320 (U2P90_01320) - 278982..279707 (+) 726 WP_322473460.1 2'-5' RNA ligase family protein -
  U2P90_RS01325 (U2P90_01325) nrdR 279907..280362 (-) 456 WP_295821995.1 transcriptional regulator NrdR -
  U2P90_RS01330 (U2P90_01330) - 280373..281107 (-) 735 WP_322473461.1 SDR family NAD(P)-dependent oxidoreductase -
  U2P90_RS01335 (U2P90_01335) - 281137..281340 (-) 204 WP_295821992.1 hypothetical protein -
  U2P90_RS01340 (U2P90_01340) - 281438..282118 (-) 681 WP_295821989.1 NUDIX hydrolase -
  U2P90_RS01345 (U2P90_01345) dnaB 282118..283464 (-) 1347 WP_295821987.1 replicative DNA helicase -
  U2P90_RS01350 (U2P90_01350) pilV 283906..284319 (+) 414 WP_322473462.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  U2P90_RS01355 (U2P90_01355) - 284380..284427 (+) 48 Protein_267 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  U2P90_RS01360 (U2P90_01360) - 284506..284739 (+) 234 WP_322474727.1 hypothetical protein -
  U2P90_RS01365 (U2P90_01365) pilV 284896..285309 (+) 414 WP_322473463.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  U2P90_RS01370 (U2P90_01370) - 285440..285985 (+) 546 WP_322473464.1 DUF1802 family protein -
  U2P90_RS01375 (U2P90_01375) - 286042..286506 (-) 465 WP_322473465.1 hypothetical protein -
  U2P90_RS01380 (U2P90_01380) - 286711..287484 (+) 774 WP_322473466.1 class I SAM-dependent DNA methyltransferase -
  U2P90_RS01385 (U2P90_01385) - 287484..288461 (+) 978 WP_322473467.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14131.22 Da        Isoelectric Point: 7.8209

>NTDB_id=912485 U2P90_RS01350 WP_322473462.1 283906..284319(+) (pilV) [Deinococcus sp. AB2017081]
MKNSTQGFTLIELLIVIAIIGILAAVLIPNLLSARTKANESAATTFIRNTITAVESNRDTVTGKLKTKAGADMTAAGETC
LLAQDAAALPAGVASCQISAGTHDNYVINLTMQGTNGKKYAYDGKTVAQVTTAVTAD

Nucleotide


Download         Length: 414 bp        

>NTDB_id=912485 U2P90_RS01350 WP_322473462.1 283906..284319(+) (pilV) [Deinococcus sp. AB2017081]
ATGAAGAACAGCACGCAGGGCTTCACCCTCATCGAGCTTCTGATCGTCATCGCCATCATCGGGATTCTGGCCGCCGTCCT
GATCCCCAACCTGCTCAGCGCCCGCACCAAGGCCAACGAGAGCGCCGCGACCACCTTCATCCGCAACACCATCACCGCCG
TCGAGTCCAACCGCGATACCGTGACTGGCAAGCTCAAAACCAAGGCGGGTGCCGATATGACCGCCGCGGGTGAGACCTGC
CTCCTCGCCCAGGATGCAGCCGCCCTCCCTGCTGGTGTCGCTTCCTGCCAGATCAGCGCAGGCACCCATGACAACTACGT
GATCAACCTGACGATGCAGGGCACCAACGGCAAGAAGTACGCCTACGACGGCAAGACGGTCGCTCAGGTTACGACTGCTG
TGACCGCCGACTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Pilin A4 (PilA4)

(39-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.529

99.27

0.482