Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   U0028_RS28305 Genome accession   NZ_CP140007
Coordinates   6099166..6099567 (-) Length   133 a.a.
NCBI ID   WP_016501972.1    Uniprot ID   A0AAU8S4N7
Organism   Pseudomonas putida strain HAMBI_0006     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6094166..6104567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0028_RS28290 (U0028_28295) - 6096130..6098154 (-) 2025 WP_230676093.1 methyl-accepting chemotaxis protein -
  U0028_RS28295 (U0028_28300) - 6098202..6098756 (-) 555 WP_016489540.1 chemotaxis protein CheW -
  U0028_RS28300 (U0028_28305) pilH 6098753..6099118 (-) 366 WP_016489541.1 twitching motility response regulator PilH -
  U0028_RS28305 (U0028_28310) pilG 6099166..6099567 (-) 402 WP_016501972.1 response regulator Regulator
  U0028_RS28310 (U0028_28315) gshB 6099720..6100673 (+) 954 WP_049275541.1 glutathione synthase -
  U0028_RS28315 (U0028_28320) - 6100765..6101670 (+) 906 WP_016501974.1 energy transducer TonB -
  U0028_RS28320 (U0028_28325) - 6101841..6102410 (+) 570 WP_016501975.1 YqgE/AlgH family protein -
  U0028_RS28325 (U0028_28330) ruvX 6102410..6102835 (+) 426 WP_049275542.1 Holliday junction resolvase RuvX -
  U0028_RS28330 (U0028_28335) pyrR 6102885..6103403 (+) 519 WP_049275543.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  U0028_RS28335 (U0028_28340) - 6103416..6104420 (+) 1005 WP_008099987.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14601.87 Da        Isoelectric Point: 6.4772

>NTDB_id=912393 U0028_RS28305 WP_016501972.1 6099166..6099567(-) (pilG) [Pseudomonas putida strain HAMBI_0006]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFTAPPQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=912393 U0028_RS28305 WP_016501972.1 6099166..6099567(-) (pilG) [Pseudomonas putida strain HAMBI_0006]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGCTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGACGGCTTCGATGCTCTGGCCAAAATCGTCGACCACCAGCCCAGCATCATCTTCG
TTGATGTGCTGATGCCGCGCCTGGACGGTTACCAGACCTGCGCCGTGATCAAGCACAACAGCGCTTTCAAGGACACCCCG
GTGATCCTGCTGTCGTCGCGCGATGGCCTGTTCGACAAGGCCCGCGGGCGGGTGGTCGGCTCTGATCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAGCTGCTCGACGCGATCCGCGCCCACGTGCCCGGGTTTACCGCGCCTCCACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632