Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   U0040_RS15650 Genome accession   NZ_CP140003
Coordinates   3166382..3167536 (+) Length   384 a.a.
NCBI ID   WP_114837736.1    Uniprot ID   A0AAV3WFN9
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3161382..3172536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS15635 (U0040_15630) - 3163061..3165127 (-) 2067 WP_114837734.1 TonB-dependent copper receptor -
  U0040_RS15640 (U0040_15635) - 3165200..3165637 (-) 438 WP_114837735.1 DUF2946 family protein -
  U0040_RS15645 (U0040_15640) def 3165728..3166261 (-) 534 WP_004684452.1 peptide deformylase -
  U0040_RS15650 (U0040_15645) tsaP 3166382..3167536 (+) 1155 WP_114837736.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  U0040_RS15655 (U0040_15650) dprA 3167559..3168692 (+) 1134 WP_114837737.1 DNA-processing protein DprA Machinery gene
  U0040_RS15660 (U0040_15655) - 3168738..3169307 (+) 570 WP_114837738.1 L-threonylcarbamoyladenylate synthase -
  U0040_RS15665 (U0040_15660) - 3169707..3170627 (-) 921 WP_114837739.1 DMT family transporter -
  U0040_RS15670 (U0040_15665) - 3170965..3171519 (+) 555 WP_114837740.1 hypothetical protein -
  U0040_RS15675 (U0040_15670) - 3171643..3172188 (+) 546 WP_114837741.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42325.29 Da        Isoelectric Point: 7.8309

>NTDB_id=912368 U0040_RS15650 WP_114837736.1 3166382..3167536(+) (tsaP) [Acinetobacter johnsonii strain HAMBI_0097]
MKKVFMGMPSFSALGFKQHMLALAVCLSVGAGVISTAQAAPTRNYNPPALKANAPNVYVVKKGNTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGKGQTVYARGQGIEAGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVASAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTEGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKLSPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=912368 U0040_RS15650 WP_114837736.1 3166382..3167536(+) (tsaP) [Acinetobacter johnsonii strain HAMBI_0097]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGTCT
AAGTGTTGGCGCTGGCGTCATTTCAACAGCTCAAGCTGCGCCTACACGAAATTACAATCCACCTGCTTTAAAAGCCAATG
CACCGAATGTTTATGTGGTGAAAAAAGGCAATACCCTGTGGGATATTTCTAAACGTTTTCTAAATAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCAGGTGACCGCTTACTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGACGAAGGTGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGGAAGGTACACCGTATATCGTTGGTGCTGCCGATCAGCGTGTGATTGCAGG
TAAAGGTCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGCCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGTAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGCTTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCTACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGACGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGAGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCAAAGCATTCAGTTGTGACGATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAAGGTCAAGAAATTCGTGATCCGAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGCAACATCATGGTATTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAACTTTCTCCCTCTGTAGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.974

100

0.661