Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   U0040_RS15230 Genome accession   NZ_CP140003
Coordinates   3073652..3073975 (-) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3068652..3078975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS15210 (U0040_15205) - 3068692..3069435 (-) 744 WP_114837594.1 FHA domain-containing protein -
  U0040_RS15215 (U0040_15210) gspD 3069523..3071880 (-) 2358 WP_114837595.1 type II secretion system secretin GspD -
  U0040_RS15220 (U0040_15215) - 3071920..3072744 (-) 825 WP_114837596.1 type II secretion system protein N -
  U0040_RS15225 (U0040_15220) gspN 3072744..3073454 (-) 711 WP_114837597.1 type II secretion system protein N -
  U0040_RS15230 (U0040_15225) hns 3073652..3073975 (-) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  U0040_RS15235 (U0040_15230) - 3074127..3074555 (-) 429 WP_004978627.1 acyl-CoA thioesterase -
  U0040_RS15240 (U0040_15235) - 3074563..3075756 (-) 1194 WP_114837598.1 heme biosynthesis protein HemY -
  U0040_RS15245 (U0040_15240) - 3075761..3076603 (-) 843 WP_114837599.1 hypothetical protein -
  U0040_RS15250 (U0040_15245) - 3076600..3077379 (-) 780 WP_114837600.1 uroporphyrinogen-III synthase -
  U0040_RS15255 (U0040_15250) hemC 3077392..3078312 (-) 921 WP_114837601.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=912364 U0040_RS15230 WP_004692786.1 3073652..3073975(-) (hns) [Acinetobacter johnsonii strain HAMBI_0097]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=912364 U0040_RS15230 WP_004692786.1 3073652..3073975(-) (hns) [Acinetobacter johnsonii strain HAMBI_0097]
ATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACCCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAACAAATTTTAG
AGTTTGGCGCGACTAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTATCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTAGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTCTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86