Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   U0040_RS14645 Genome accession   NZ_CP140003
Coordinates   2949293..2951515 (+) Length   740 a.a.
NCBI ID   WP_114836931.1    Uniprot ID   A0AAV3WDV6
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2944293..2956515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS14620 (U0040_14615) - 2945270..2945608 (-) 339 WP_004978826.1 tRNA-binding protein -
  U0040_RS14625 (U0040_14620) - 2945768..2946103 (-) 336 WP_004978824.1 hypothetical protein -
  U0040_RS14630 (U0040_14625) - 2946278..2947240 (-) 963 WP_326942896.1 IS30 family transposase -
  U0040_RS14635 (U0040_14630) gspG 2947464..2947901 (-) 438 WP_010325797.1 type II secretion system major pseudopilin GspG -
  U0040_RS14640 (U0040_14635) gspF 2947935..2949140 (-) 1206 WP_058868820.1 type II secretion system inner membrane protein GspF -
  U0040_RS14645 (U0040_14640) priA 2949293..2951515 (+) 2223 WP_114836931.1 primosomal protein N' Machinery gene
  U0040_RS14650 (U0040_14645) - 2951598..2953439 (+) 1842 WP_078388552.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  U0040_RS14655 (U0040_14650) - 2953490..2954365 (+) 876 WP_114836930.1 Hsp33 family molecular chaperone HslO -
  U0040_RS14660 (U0040_14655) - 2954565..2955017 (+) 453 WP_058868816.1 DUF2147 domain-containing protein -
  U0040_RS14665 (U0040_14660) - 2955161..2956114 (+) 954 WP_078388551.1 DnaJ C-terminal domain-containing protein -
  U0040_RS14670 (U0040_14665) - 2956125..2956481 (+) 357 WP_004978810.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84160.03 Da        Isoelectric Point: 8.7896

>NTDB_id=912360 U0040_RS14645 WP_114836931.1 2949293..2951515(+) (priA) [Acinetobacter johnsonii strain HAMBI_0097]
MPETTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDSAILDAKVLSLLTWSAQYYQFPIGEVMHTALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKQITQCILEAQDFKPQAMTLAQMPLTPNDEQKRAIQNILKAHHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGKASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQALFPNFDVIRVDRDSTSRVGSWQRIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQSFLQEHAQVLRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=912360 U0040_RS14645 WP_114836931.1 2949293..2951515(+) (priA) [Acinetobacter johnsonii strain HAMBI_0097]
ATGCCAGAAACTACACTTTCCACAACACCAAGCTACCGTATTCGTGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAACTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTCAAAGCCATAACTGAGTTGCTC
GATGACAGCGCTATTCTAGATGCTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCCATTGGGGA
AGTGATGCATACTGCTTTACCCAGCTTTTTACGCCAAGGTAAACCCTATAATTTACTGGCGCGAATGTGGAAGCTGATTG
ATGATCATGCCGAAGACAAATTGAAGCGTTCTGAAAAACAACAAGATGCCTATAAAATTTTAAAGCTGCATCCCACAGGA
ACGTCTGAAAACATTCTAAATTTGGCTGGCATTGAAACTGCGACCTTAAAGGCCTTAGAAAAAAAGCAAATCACCCAGTG
CATACTTGAAGCCCAAGACTTTAAACCACAAGCTATGACGCTGGCGCAAATGCCCCTCACCCCCAATGATGAACAAAAGC
GTGCCATTCAAAACATTCTCAAAGCTCATCATAGCTACCACGCTTTCTTACTGGATGGTTTAACCGGTAGTGGGAAAACT
GAAGTCTATTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTCTTGGTATTAGTGCCTGAAATTGGTCTCAC
CCCACAAACAGTGAGCCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTTCAAGCCTGGCAAAGTGCGCAAACGGGCAAAGCCTCAATTGTGATTGGCACACGTTCTGCCATCTATACGCCCCTT
CCGCATCTGGGTTTGATTGTCTTAGATGAAGAGCATGATCTATCTTTCAAGCAACAAGAGGGCTTCCGTTACCATGCTCG
TGATGTGGCTTTATACCGTGCGCACTTAGAAAACTGTCCGATTATCCTCGGCTCTGCAACGCCAAGTATCGACAGTTATG
CGTTGGTCGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTAAAAGTGGCACAAAAACAAAATGGCATCAGCCAACAACTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGTCGCGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCCAAGT
GCCCCCACTGCGATGCCAATTTTACCGTGCATCGACAGCCCTATCAGCATTTGCACTGTCACCACTGCGGCACCATCCAC
CGCATGCCTGAACACTGCCCACAATGTCAGCATAGCGAACTAAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGCACTGTTCCCCAACTTTGACGTAATTCGGGTGGATCGTGACTCGACCAGTCGGGTCGGCAGCTGGCAAAGAA
TCTATAACAAAATCCAAAAAAGTGAACCCATCATTTTGCTCGGCACCCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTGGTGGCGATTTTAGACATCGACTCGGGCTTACTCAGTGTTGACTTTCGCGCCACAGAACGTACCGCACAGCT
CATCATCCAAGTCGCTGGACGTGCTGGGCGCGGTGAGAAAAAAGGCGAAGTCTATTTACAAACTCTACGTCCAGACCATC
CTTTGCTGAATACCCTGCTGGAATCGGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAACTGAACCAAAGCTTTTTACAAGAGCATGC
ACAAGTACTGCGCCAAGCCTCAGAAAACAGTATTGATATTTGGGGGCCCATTCCTGCGCCGATGGAACGTAAAGCAGGCC
GCTATCAAGCGCATATGGTACTACTGTCCAAAGATCGAGCGCGGATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCACAACAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(210-371)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.956

98.784

0.711