Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   L6411_RS02960 Genome accession   NZ_AP025333
Coordinates   594996..595799 (+) Length   267 a.a.
NCBI ID   WP_024532080.1    Uniprot ID   A0A2Z5TLI9
Organism   Streptococcus ruminantium strain GUT-189     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 589996..600799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6411_RS02935 (GUT189_05320) - 590428..591126 (-) 699 WP_155961912.1 amino acid ABC transporter permease -
  L6411_RS02940 (GUT189_05330) - 591141..591977 (-) 837 WP_120171457.1 transporter substrate-binding domain-containing protein -
  L6411_RS02945 (GUT189_05340) - 591987..592748 (-) 762 WP_155964462.1 amino acid ABC transporter ATP-binding protein -
  L6411_RS02950 (GUT189_05350) micA 592943..593647 (+) 705 WP_120171458.1 response regulator YycF Regulator
  L6411_RS02955 (GUT189_05360) micB 593640..594989 (+) 1350 WP_024532081.1 cell wall metabolism sensor histidine kinase VicK Regulator
  L6411_RS02960 (GUT189_05370) vicX 594996..595799 (+) 804 WP_024532080.1 MBL fold metallo-hydrolase Regulator
  L6411_RS02965 (GUT189_05380) pbp2b 596022..598097 (+) 2076 WP_024532079.1 penicillin-binding protein PBP2B -
  L6411_RS02970 (GUT189_05390) recR 598106..598702 (+) 597 WP_024532078.1 recombination mediator RecR -
  L6411_RS02975 (GUT189_05400) - 598956..600002 (+) 1047 WP_024532077.1 D-alanine--D-alanine ligase -
  L6411_RS02980 (GUT189_05410) - 600090..600470 (+) 381 WP_155964466.1 OsmC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29621.68 Da        Isoelectric Point: 5.7767

>NTDB_id=91236 L6411_RS02960 WP_024532080.1 594996..595799(+) (vicX) [Streptococcus ruminantium strain GUT-189]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLSEIDRRPEEIDAIFVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIEANHDVEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQVCDTSPDTATALTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=91236 L6411_RS02960 WP_024532080.1 594996..595799(+) (vicX) [Streptococcus ruminantium strain GUT-189]
ATGATCGGAAAAGGTTTTAATTACAGTATTTTAGCTTCGGGCTCCAGTGGTAATTGCTTTTATTTGGAAACCGATAAGAA
GAAAATTTTAGTGGATGCAGGTTTGTCTGGTAAAAAGATCACCAGTCTCCTTTCGGAAATTGACCGCAGACCAGAGGAGA
TTGATGCTATTTTTGTGACGCATGAGCATAGTGACCATATCCATGGTATCGGTGTCTTGGCTCGGAAATATGGCATGGAT
ATATACGCTAACGAGTTAACCTGGCAGGCAATGGAAAGTAAGCTTGGTAAGATTGATGTTGCTCAGAAACATATCTTTGA
GCTAGGGGCGATGAAGACATTTGGAGACTTGGACATTGAATCCTTCGGTGTCAGTCACGATGCAGCCTGCCCACAATTTT
ATCGTTTTATGAAGGACGATAAGTCTTTCGTTATGTTGACAGATACAGGTTATGTCAGTGATCGCATGGTTGGAATTGTG
GAAAATGCAGATGCCTATTTGATTGAGGCGAACCATGATGTTGAAATTTTGCGAGCAGGTTCTTATTCTTGGAATTTGAA
GCAACGTATCCTTTCAGATAAGGGGCACCTCTGTAATGAGGATGGAGCAGATGCTATGATTCGCTCGTTAGGAAATCGGA
CAAAAAAGATTTACCTTGGGCATTTGTCTAAGGAGAATAATATTAAAGAACTTGCTCATATGACGATGGTTAATCAGCTT
GCGCAAGCTGACTTGGGAGTAGGAACTGATTTTCAAGTTTGTGATACGTCTCCGGATACAGCAACCGCTTTAACGAAGAT
TTGA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5TLI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

73.783

100

0.738

Multiple sequence alignment