Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   U0040_RS11790 Genome accession   NZ_CP140003
Coordinates   2387730..2392184 (-) Length   1484 a.a.
NCBI ID   WP_114837796.1    Uniprot ID   A0AAV3WJ99
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 2382730..2397184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS11760 (U0040_11760) elsL 2383785..2384282 (-) 498 WP_010326245.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  U0040_RS11765 (U0040_11765) - 2384282..2384674 (-) 393 WP_058869166.1 YbaN family protein -
  U0040_RS11770 (U0040_11770) - 2384772..2385650 (+) 879 WP_078388414.1 DUF1853 family protein -
  U0040_RS11775 (U0040_11775) - 2385808..2385954 (+) 147 WP_010326244.1 entericidin A/B family lipoprotein -
  U0040_RS11780 (U0040_11780) dapE 2386071..2387204 (+) 1134 WP_114837794.1 succinyl-diaminopimelate desuccinylase -
  U0040_RS11785 (U0040_11785) - 2387270..2387725 (-) 456 WP_114837795.1 hypothetical protein -
  U0040_RS11790 (U0040_11790) chpA 2387730..2392184 (-) 4455 WP_114837796.1 Hpt domain-containing protein Regulator
  U0040_RS11795 (U0040_11795) - 2392350..2394422 (-) 2073 WP_114837797.1 methyl-accepting chemotaxis protein -
  U0040_RS11800 (U0040_11800) - 2394572..2395453 (+) 882 WP_019767920.1 IS982 family transposase -
  U0040_RS11805 (U0040_11805) - 2395424..2395991 (-) 568 Protein_2286 chemotaxis protein CheW -
  U0040_RS11810 (U0040_11810) - 2395997..2396365 (-) 369 WP_004694491.1 response regulator -
  U0040_RS11815 (U0040_11815) pilG 2396396..2396779 (-) 384 WP_004694493.1 twitching motility response regulator PilG Regulator

Sequence


Protein


Download         Length: 1484 a.a.        Molecular weight: 165813.37 Da        Isoelectric Point: 4.4039

>NTDB_id=912352 U0040_RS11790 WP_114837796.1 2387730..2392184(-) (chpA) [Acinetobacter johnsonii strain HAMBI_0097]
MKEILKHLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVDLDPLFEKWYAEPTHQETLLSIRRHFHTLKGSGRMVGAKSA
GETAWAVEDTLNRVISGAVPLTATVQKFAKTVFKLYQFKLYPIFKAVQEIDLDLRPLVLIGQQLQQNQSLEPALEELLQL
SNHLNSNDVVTGLELRDIEVAESEPQVADASEQDDQVHDVLEETLAIFIEEAEDHLATIDQFLNADETKVQDYNGLIRAL
HTLRGSSSMAQIEHVFNASSKVENLFKTLVQEEIVSTSKEISLLIQYAEFVRDYLHVLGRGTNEQLDVIYATFSTAWDNY
GFSIEDVDDELNPQGMVSKLIELNIDLLLDAEFEFDQRAKVEYPEYIQHLGEQAKQLLEFTNNRAAQGIHDFTSELYAGY
QALLEKPELLNVDYAYELFGQAHQEFIHLFDTLAAGQRVILTEEVHKVLNELMAFVQQDVESTSTTVIEPVAEAIVSGNT
LQPSLDLAQISQQIALDHQYKQSNTANTDFDDDLLDIFLEEAEELLMGMDQDLNTWSKNGNDTAALNNLMRYLHTLKGGA
NMISAPFIGSIAHELESIYERVIRQQIATTPQLISIIRLVQDDVADRIQVIRTEKVDYPATATINVLHNIQSLVEGTTVT
TTASEPLVEAFVAAVEEPLSNIDRTIEAEAAAVESATAIEASSVVENTDVTVVEQLDTPSLVQEEASLLSIVEETFLEEA
EEILATTDGLLKQWTEQRSDRSVLLQLQRAAHSLKGGARMAVNEPVGAIAYELETTFEQFAVHNFSSNVYDPLLQTAFEW
LKQAIFKRDFSNYDGLKNSLASIDYVDVIAQLPTRVTQIDLLNAVPSFEFVQGDGTEPPAMLGEWKETTHLDGGNEMIRI
SADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSENSRYADFDPLEMDQY
SSLNQLSKSLAESASDLVDFKSTLAEKIRDAEGLLLQQSRIQAEIQESLMRTRLVPFSRMLPRLQRIVRQTASTLNRPTE
LVVHNTEGELDRTILERLVTPFEHMLRNAIDHGIEDGEQRSAAKKSATGQIELNISRQGTDVIVSFKDDGKGIDESTIKA
KALNLGLIKADQVLDKQEILQFIFHPGFSTAKEVTQISGRGVGLDVVQSEIKALGGHVTVESEIGFGTTFIIRVPTTVAV
SDALMVKAGDQQYAIPLAQIDRIVRIAPTALDQYFHSKDDQFKIDGVSYKLRYLSEFLSNQPIPRLSNIGHSLPVLLIKG
NSGQTIALLVDQLIGSRAQIVVKPVGQQFASIGAIAGATILGNGHVCLILDGQNIARQILSTKRVTHAVDHRDFGRHQDT
RRLVMIVDDSVTVRKVTSRLLERQGFDIVTAKDGVDAMEQLESVKPDLMLLDIEMPRMDGFEVTNLVRHHEIHQNLPIIM
ITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLLAEKQG

Nucleotide


Download         Length: 4455 bp        

>NTDB_id=912352 U0040_RS11790 WP_114837796.1 2387730..2392184(-) (chpA) [Acinetobacter johnsonii strain HAMBI_0097]
ATGAAAGAAATATTAAAACATTTAGTTGAAACGACAACGCTTCCGGAAGATAGTTATCTAGATCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAAGAAATTGAAGAAATCTTCGTTGACTTAGATCCATTATTTGAAAAGTGGTACGCTGAACCGACAC
ATCAAGAAACTTTGTTGAGCATACGTCGTCACTTCCATACCTTAAAAGGCTCTGGTCGTATGGTGGGGGCAAAGTCAGCA
GGTGAAACAGCATGGGCGGTTGAAGATACCTTAAATCGTGTGATTTCAGGAGCTGTGCCTCTCACGGCAACGGTTCAAAA
ATTCGCTAAAACAGTATTCAAACTGTATCAATTTAAACTGTATCCGATATTCAAAGCGGTACAGGAAATTGATCTTGATC
TTCGTCCATTGGTTTTAATTGGACAACAATTACAACAAAATCAAAGTTTAGAACCTGCTCTAGAAGAGTTGCTACAACTG
TCTAATCATCTAAATAGTAATGATGTCGTGACGGGATTAGAGCTGAGAGATATCGAAGTGGCTGAATCTGAGCCGCAAGT
TGCAGACGCATCTGAACAGGATGATCAAGTACATGATGTCCTTGAAGAAACTTTAGCGATCTTCATTGAAGAAGCGGAAG
ACCATTTAGCGACTATCGATCAGTTCTTAAATGCAGATGAAACCAAAGTACAAGATTACAATGGTTTAATCCGGGCTTTA
CATACATTGCGCGGTAGTTCGTCTATGGCGCAAATTGAGCATGTCTTTAATGCCAGCTCAAAAGTTGAAAATCTATTTAA
AACTTTGGTTCAAGAAGAGATCGTTTCTACTTCGAAGGAAATCTCTTTACTCATCCAATATGCTGAATTTGTACGTGACT
ATTTACATGTGCTTGGGCGTGGTACGAACGAACAGCTTGACGTGATTTATGCTACGTTCAGTACGGCTTGGGATAACTAT
GGTTTCAGTATAGAAGACGTAGACGATGAACTGAACCCACAAGGTATGGTCTCGAAGCTGATCGAGTTAAATATTGATCT
GCTGCTTGATGCCGAGTTTGAGTTTGATCAGCGTGCTAAGGTTGAATATCCTGAATATATTCAGCACTTAGGTGAACAAG
CAAAACAATTGCTGGAATTCACCAATAACCGTGCTGCACAAGGAATTCATGACTTTACTTCTGAGCTATATGCTGGTTAT
CAAGCCTTACTGGAAAAGCCAGAATTACTCAATGTAGATTATGCATACGAGTTATTTGGTCAGGCACATCAAGAATTTAT
CCATTTATTTGACACTTTAGCTGCGGGCCAGCGCGTCATTCTGACTGAAGAAGTGCATAAAGTTCTGAATGAATTAATGG
CCTTCGTACAGCAAGATGTTGAATCGACTTCGACGACGGTAATTGAACCTGTTGCTGAGGCTATTGTTTCTGGAAATACT
TTACAACCAAGCCTTGATCTTGCGCAGATTTCGCAGCAAATTGCATTGGATCATCAGTACAAGCAATCGAATACAGCCAA
TACCGATTTTGATGATGATTTGCTTGATATCTTCTTGGAAGAAGCCGAAGAATTATTGATGGGGATGGATCAGGATCTCA
ATACTTGGTCTAAAAATGGCAATGATACCGCGGCACTCAATAATTTAATGCGTTATTTGCACACCTTAAAAGGTGGTGCC
AATATGATTTCTGCACCTTTTATTGGTTCGATTGCACACGAATTAGAGTCTATTTATGAGCGTGTGATTCGTCAGCAAAT
TGCCACAACACCACAGTTGATCAGCATCATACGCTTAGTACAGGATGACGTCGCAGACCGAATTCAGGTCATTCGTACGG
AGAAGGTTGATTATCCAGCAACAGCGACTATCAATGTACTGCATAACATTCAGAGCTTGGTTGAGGGTACGACTGTTACA
ACTACAGCATCCGAGCCTTTAGTTGAAGCGTTTGTTGCGGCAGTTGAAGAACCTTTATCTAATATAGATAGAACGATTGA
AGCTGAGGCAGCTGCGGTTGAGTCAGCAACTGCAATTGAAGCGTCAAGTGTAGTTGAAAACACTGACGTTACTGTCGTTG
AACAGCTGGATACTCCGTCACTTGTCCAAGAAGAAGCCAGTCTGTTATCAATTGTTGAAGAAACCTTCTTGGAAGAAGCT
GAAGAAATTTTAGCGACTACGGATGGCTTACTGAAACAGTGGACTGAACAACGTAGTGACCGTAGTGTGTTACTACAATT
GCAACGTGCTGCGCACAGCTTAAAAGGCGGCGCGCGTATGGCGGTGAATGAACCTGTTGGTGCGATTGCTTATGAATTAG
AAACCACATTTGAGCAATTTGCTGTACATAATTTCAGTTCAAACGTGTATGACCCATTATTGCAAACCGCATTTGAATGG
TTAAAACAAGCCATCTTCAAACGTGATTTTAGTAATTATGATGGTCTGAAAAATAGCTTAGCATCTATTGATTATGTGGA
TGTGATTGCACAATTACCTACGCGTGTAACTCAAATTGATTTACTCAATGCGGTACCAAGTTTTGAGTTTGTGCAGGGTG
ATGGTACTGAGCCGCCAGCAATGCTGGGTGAGTGGAAAGAAACGACTCACTTGGATGGCGGTAATGAGATGATCCGTATC
TCAGCTGATTTGGTTGAAAAAATGATCGACCTGTCAGGTGAAAATGCAATTAACCGTTCGCGTATCGAGATGGACTTAGG
TCAACTCGGCAATACTTTGAACGAGATGGAGCTTGCAATTAAGCGTTTGGCGGATCAGTTGCGTCGAATGGAAGGCGAGC
TTGAGAGTCAAATTATTGCGAAGCACGGTTCTGAAAACTCGCGCTACGCAGACTTTGACCCCTTGGAAATGGACCAATAT
TCATCGCTCAATCAATTGTCTAAATCCTTAGCCGAATCAGCTTCGGATTTAGTCGACTTCAAGAGCACTTTGGCTGAAAA
AATTCGTGATGCAGAAGGCTTGTTATTACAACAATCCCGTATTCAAGCGGAGATTCAAGAAAGCTTAATGCGGACACGTT
TGGTGCCGTTCTCACGTATGTTGCCGCGTTTACAACGTATTGTGCGTCAGACCGCCTCAACCTTGAACCGTCCAACGGAA
TTGGTCGTTCATAACACTGAAGGTGAATTAGACCGTACGATTCTTGAACGTTTGGTTACACCATTTGAGCATATGCTACG
TAACGCAATCGACCATGGTATTGAAGATGGGGAACAACGTAGCGCTGCGAAAAAATCAGCGACAGGTCAAATTGAACTGA
ACATTAGTCGTCAAGGTACAGACGTTATCGTCAGCTTTAAAGATGATGGTAAGGGTATTGATGAAAGCACGATTAAAGCG
AAAGCGCTAAACCTAGGTTTAATTAAAGCCGATCAAGTGCTAGATAAACAGGAAATCTTACAGTTTATTTTCCATCCGGG
TTTTAGTACGGCCAAAGAAGTGACGCAAATTTCTGGACGTGGTGTTGGTCTTGATGTGGTACAAAGTGAAATTAAAGCAC
TGGGTGGACATGTCACGGTTGAATCGGAAATTGGATTCGGTACGACCTTCATTATTCGCGTACCGACTACGGTAGCGGTG
AGCGATGCTTTGATGGTAAAAGCAGGTGATCAACAATATGCGATTCCATTGGCGCAGATTGATCGTATTGTGCGTATTGC
TCCAACAGCATTGGATCAGTATTTCCACAGCAAAGATGACCAATTCAAAATTGATGGTGTGAGTTATAAACTGCGCTATT
TATCTGAGTTTTTATCCAATCAGCCGATCCCGCGTTTGAGTAATATTGGACATTCATTGCCGGTGTTGTTGATTAAAGGC
AACAGTGGACAAACCATTGCCTTATTGGTCGATCAGTTGATTGGTTCACGTGCGCAAATTGTAGTGAAGCCAGTTGGGCA
ACAGTTTGCCAGCATTGGTGCAATTGCTGGTGCAACGATTTTGGGTAATGGACATGTGTGTTTGATTTTAGATGGTCAGA
ACATTGCACGTCAGATTTTAAGTACCAAGCGTGTGACGCATGCAGTTGATCACCGTGACTTTGGTCGCCATCAGGATACA
CGTCGTTTAGTGATGATTGTGGATGACTCGGTCACGGTACGTAAGGTGACATCGCGCTTATTAGAGCGTCAAGGCTTTGA
TATTGTGACAGCAAAAGACGGTGTCGATGCGATGGAACAGCTTGAGAGCGTTAAACCAGACCTGATGTTGCTGGATATTG
AAATGCCACGTATGGATGGTTTCGAAGTAACGAACTTGGTTCGTCACCACGAAATTCACCAGAACTTGCCGATTATTATG
ATTACATCGCGTACGGGTGAAAAACACCGTGAACGTGCTTTCAGCTTGGGCGTGACACACTACATGGGCAAACCATTCCA
AGAGGCAGAATTACTTGCCAACATTCAGCAACTATTGGCTGAAAAGCAGGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.872

100

0.621