Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   U0040_RS02280 Genome accession   NZ_CP140003
Coordinates   474808..475665 (+) Length   285 a.a.
NCBI ID   WP_004691238.1    Uniprot ID   A0AAW6JCY5
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469808..480665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS02255 (U0040_02255) - 470443..470796 (-) 354 WP_062032472.1 hypothetical protein -
  U0040_RS02260 (U0040_02260) - 471009..472061 (-) 1053 WP_228254607.1 sensor domain-containing diguanylate cyclase -
  U0040_RS02265 (U0040_02265) - 472338..472913 (-) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  U0040_RS02270 (U0040_02270) - 473004..473714 (-) 711 WP_114837371.1 DUF3108 domain-containing protein -
  U0040_RS02275 (U0040_02275) - 473870..474547 (-) 678 WP_004691240.1 hypothetical protein -
  U0040_RS02280 (U0040_02280) tonB2 474808..475665 (+) 858 WP_004691238.1 energy transducer TonB Machinery gene
  U0040_RS02285 (U0040_02285) - 475711..476121 (-) 411 WP_114837381.1 hypothetical protein -
  U0040_RS02290 (U0040_02290) ybeY 476223..476702 (-) 480 WP_114837372.1 rRNA maturation RNase YbeY -
  U0040_RS02295 (U0040_02295) - 476760..477836 (-) 1077 WP_004977846.1 PhoH family protein -
  U0040_RS02300 (U0040_02300) miaB 477875..479332 (-) 1458 WP_114837373.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32599.13 Da        Isoelectric Point: 6.6632

>NTDB_id=912341 U0040_RS02280 WP_004691238.1 474808..475665(+) (tonB2) [Acinetobacter johnsonii strain HAMBI_0097]
MPLAHDWWKDPIFTATVVLAVFLHLVILTLQFAMPQENDAAVKEIAVTLRPSDKKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=912341 U0040_RS02280 WP_004691238.1 474808..475665(+) (tonB2) [Acinetobacter johnsonii strain HAMBI_0097]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTCGTACTGGCGGTATTTTTGCATCTCGTGAT
TTTGACTTTGCAATTTGCTATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCTGTCACTTTACGCCCTTCTGATA
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAAGGTTCAGGGACCTTTCGTGAATCACATCGTATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAACAGCAGCGTGAAACTTTAGAGCAGATCCAACAAAAACG
TGAACTGAATTTTGAAGAAAAACTGTTGATGACGACTTTAAGTTGGCAAAAACAAGCTGAGGATAATCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGTCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGTCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATATTTCGGCCGCCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAGTTTTATGGCAACCGTTACTATCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGCATCCGTGCTATTCGCCTGATTGATAGTTCAGGTCATGAGATGCTC
GATGAGGCGGCAAAAGCATCGGTACGTAAGGCTGCACCATTTGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGACCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.286

98.246

0.73