Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U0041_RS17335 Genome accession   NZ_CP140000
Coordinates   3778446..3779003 (-) Length   185 a.a.
NCBI ID   WP_022677226.1    Uniprot ID   -
Organism   Novosphingobium capsulatum strain HAMBI_0103     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3773446..3784003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0041_RS17320 (U0041_17305) - 3774250..3776964 (+) 2715 WP_062785203.1 valine--tRNA ligase -
  U0041_RS17325 (U0041_17310) - 3777177..3777923 (+) 747 WP_062785250.1 7-carboxy-7-deazaguanine synthase QueE -
  U0041_RS17330 (U0041_17315) - 3778016..3778378 (+) 363 WP_062785252.1 hypothetical protein -
  U0041_RS17335 (U0041_17320) ssb 3778446..3779003 (-) 558 WP_022677226.1 single-stranded DNA-binding protein Machinery gene
  U0041_RS17340 (U0041_17325) feoB 3779092..3780951 (-) 1860 WP_062785254.1 ferrous iron transporter B -
  U0041_RS17345 (U0041_17330) - 3780948..3781193 (-) 246 WP_062785299.1 FeoA family protein -
  U0041_RS17350 (U0041_17335) - 3781306..3781986 (-) 681 WP_028658110.1 COQ9 family protein -
  U0041_RS17355 (U0041_17340) - 3782035..3782667 (-) 633 WP_022677229.1 ankyrin repeat domain-containing protein -
  U0041_RS17360 (U0041_17345) - 3782734..3783384 (+) 651 WP_084390917.1 SCO family protein -
  U0041_RS17365 (U0041_17350) - 3783388..3783900 (+) 513 WP_062785256.1 YcgN family cysteine cluster protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 18648.23 Da        Isoelectric Point: 5.9235

>NTDB_id=912331 U0041_RS17335 WP_022677226.1 3778446..3779003(-) (ssb) [Novosphingobium capsulatum strain HAMBI_0103]
MAGSVNKVILIGNLGADPEIKSFQNGGKIANLRIATSENWKDRNTGERKERTEWHSVVINGDGLIGVVERFLRKGSKVYI
EGQLRTRKWQDQSGNDRYSTEVVVAGIGGALTMLDGPQGGAGGGGGGGQRSGGGGWNDGGSSSGGSRGGGSGGFGGGSSS
GGGSTWNQGGGGGGFADDLDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=912331 U0041_RS17335 WP_022677226.1 3778446..3779003(-) (ssb) [Novosphingobium capsulatum strain HAMBI_0103]
ATGGCAGGCAGCGTCAACAAAGTCATTCTGATCGGCAACCTGGGGGCCGACCCGGAGATCAAGTCGTTCCAGAACGGCGG
CAAGATTGCGAACCTGCGCATTGCCACCTCGGAAAACTGGAAGGACCGCAACACCGGCGAGCGCAAGGAGCGCACGGAAT
GGCACAGCGTCGTGATCAACGGCGATGGCCTGATCGGCGTGGTCGAGCGCTTCCTGCGCAAGGGCAGCAAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAGTGGCAGGACCAGAGCGGCAATGACCGTTACAGCACCGAAGTGGTCGTGGCCGGCAT
CGGCGGCGCGCTGACAATGCTCGACGGCCCGCAGGGCGGTGCCGGCGGTGGTGGTGGCGGCGGTCAGCGCTCTGGCGGAG
GCGGCTGGAACGACGGCGGCTCGAGCAGCGGCGGTTCGCGTGGTGGTGGCAGCGGTGGCTTTGGCGGCGGGTCGTCCTCG
GGCGGCGGCAGCACCTGGAACCAGGGTGGCGGCGGCGGCGGCTTCGCCGACGATCTGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.634

98.919

0.481
  ssb Glaesserella parasuis strain SC1401

45.026

100

0.465