Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK07_RS19580 Genome accession   NZ_AP027869
Coordinates   4034118..4034633 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2018-01-1CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4029118..4039633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK07_RS19535 (VEE71_37210) csrA 4029570..4029755 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABK07_RS19565 (VEE71_37220) yqaB 4031348..4031914 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK07_RS19570 (VEE71_37230) yqaA 4031911..4032339 (+) 429 WP_001287454.1 YqaA family protein -
  AABK07_RS19575 (VEE71_37240) gshA 4032412..4033968 (+) 1557 WP_023281437.1 glutamate--cysteine ligase -
  AABK07_RS19580 (VEE71_37250) luxS 4034118..4034633 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABK07_RS19585 (VEE71_37260) emrB 4034697..4036235 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK07_RS19590 (VEE71_37270) emrA 4036252..4037424 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABK07_RS19595 (VEE71_37280) emrR 4037551..4038081 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABK07_RS19600 (VEE71_37290) ygaH 4038172..4038507 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AABK07_RS19605 (VEE71_37300) ygaZ 4038497..4039234 (-) 738 WP_172409474.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=91233 AABK07_RS19580 WP_001130211.1 4034118..4034633(+) (luxS) [Escherichia coli strain 2018-01-1CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=91233 AABK07_RS19580 WP_001130211.1 4034118..4034633(+) (luxS) [Escherichia coli strain 2018-01-1CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment