Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   L6411_RS01230 Genome accession   NZ_AP025333
Coordinates   229745..230458 (+) Length   237 a.a.
NCBI ID   WP_024531595.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-189     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 224745..235458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6411_RS01220 (GUT189_02070) treC 225764..227395 (-) 1632 WP_237374248.1 alpha,alpha-phosphotrehalase -
  L6411_RS01225 (GUT189_02080) treP 227518..229521 (-) 2004 WP_155973584.1 PTS system trehalose-specific EIIBC component -
  L6411_RS01230 (GUT189_02090) treR 229745..230458 (+) 714 WP_024531595.1 trehalose operon repressor Regulator
  L6411_RS01235 (GUT189_02100) - 230514..230825 (+) 312 WP_024531596.1 hypothetical protein -
  L6411_RS01240 (GUT189_02110) - 230822..231370 (+) 549 WP_024531597.1 CvpA family protein -
  L6411_RS01245 (GUT189_02120) - 231497..233830 (+) 2334 WP_237374249.1 endonuclease MutS2 -
  L6411_RS01250 (GUT189_02130) - 233876..234520 (+) 645 WP_237374250.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27391.37 Da        Isoelectric Point: 8.9094

>NTDB_id=91227 L6411_RS01230 WP_024531595.1 229745..230458(+) (treR) [Streptococcus ruminantium strain GUT-189]
MKKYQEIYNDLKEKIRTNVYLAETSLPTEQELQKIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPISGLT
SYQELTDSLQLSTQTKVVHLDMITVDSSLSSLTGFETYSKVWKVIRTRSIDGKVSVVDTDYLSVDVVPKLTVDVAEKSIY
EYLENELGLDIAYAQKEITVEPTNREERRLLKAQDDYLVLIKSRVYLGDTRQFQYTESRHKIDKFRFVDFARRKRTL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=91227 L6411_RS01230 WP_024531595.1 229745..230458(+) (treR) [Streptococcus ruminantium strain GUT-189]
ATGAAAAAGTATCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTACCTAGCGGAAACTTCCTTGCC
TACAGAACAAGAACTTCAGAAAATTTACGGTGTCAGTCGCGATACTGTTCGTAAGGCCTTAGCCATTTTGACAGAGGGTG
GTCTGATTCAAAAGGTTCAGGGACGTGGCTCCATGGTTCTCAAGCAGGAAATTCTTAACTTTCCTATCTCAGGTCTGACT
TCCTATCAGGAATTAACAGATTCTCTTCAATTATCTACACAGACGAAGGTTGTTCACTTGGATATGATAACGGTTGATTC
TAGCCTTTCCAGCCTGACAGGTTTTGAGACTTACAGTAAGGTATGGAAAGTTATCCGTACACGTTCTATTGATGGAAAAG
TCTCTGTTGTGGATACAGATTATCTTTCTGTAGATGTGGTACCAAAGTTGACGGTGGATGTTGCTGAGAAGTCTATTTAC
GAATATCTGGAAAATGAGCTAGGCCTAGACATAGCATATGCACAAAAGGAAATCACCGTAGAGCCAACCAATCGAGAAGA
ACGCAGATTGTTGAAGGCGCAGGATGACTATTTGGTCTTAATCAAGTCGCGTGTCTATCTCGGTGATACCAGGCAGTTCC
AATACACAGAAAGTAGACACAAGATTGATAAATTCCGCTTTGTGGATTTTGCCCGCAGAAAGCGAACTTTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.119

99.578

0.519

Multiple sequence alignment