Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U0026_RS14700 Genome accession   NZ_CP139986
Coordinates   3017287..3017895 (-) Length   202 a.a.
NCBI ID   WP_062777498.1    Uniprot ID   -
Organism   Kluyvera intermedia strain HAMBI_1299     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3012287..3022895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0026_RS14685 (U0026_14680) helD 3012508..3014562 (-) 2055 WP_062777493.1 DNA helicase IV -
  U0026_RS14690 (U0026_14685) - 3014685..3015131 (+) 447 WP_062777495.1 YccF domain-containing protein -
  U0026_RS14695 (U0026_14690) yccS 3015151..3017277 (+) 2127 WP_062777496.1 YccS family putative transporter -
  U0026_RS14700 (U0026_14695) sxy/tfoX 3017287..3017895 (-) 609 WP_062777498.1 TfoX/Sxy family DNA transformation protein Regulator
  U0026_RS14705 (U0026_14700) sulA 3018114..3018623 (+) 510 WP_062777500.1 SOS-induced cell division inhibitor SulA -
  U0026_RS14710 (U0026_14705) ompA 3018978..3020033 (+) 1056 WP_062777502.1 porin OmpA -
  U0026_RS14715 (U0026_14710) matP 3020120..3020575 (-) 456 WP_062777504.1 macrodomain Ter protein MatP -
  U0026_RS14720 (U0026_14715) - 3020760..3022520 (+) 1761 WP_062777506.1 AAA family ATPase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23331.25 Da        Isoelectric Point: 10.4580

>NTDB_id=912226 U0026_RS14700 WP_062777498.1 3017287..3017895(-) (sxy/tfoX) [Kluyvera intermedia strain HAMBI_1299]
MKVISYKRIYQSQEYFAVLGKVRSRALFGGYSLAVDDTVFAMVAEGELYLRMCEKTAIYQTQHSPPLLMLRKRGSSLQLK
YFKVDDALWANKPVLLQLGLFSLEDARREKSHQKHPQRLKDLPNLSFHMELLLHEAGIKDVRALQQMGAKTVWLLLRQKR
KQISSNVIYSLEGAIQGVHAAALPALKRQELEEWVRNRTHKN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=912226 U0026_RS14700 WP_062777498.1 3017287..3017895(-) (sxy/tfoX) [Kluyvera intermedia strain HAMBI_1299]
ATGAAGGTAATATCATATAAACGGATTTATCAATCCCAGGAATATTTTGCGGTGTTAGGAAAAGTCAGGTCACGAGCGCT
GTTTGGTGGTTACAGCCTTGCCGTTGACGACACGGTTTTCGCAATGGTTGCGGAGGGGGAGCTGTATTTGAGGATGTGCG
AAAAAACCGCCATTTATCAGACTCAGCACTCGCCGCCATTATTGATGTTACGTAAACGAGGAAGCTCGCTTCAGCTTAAG
TATTTCAAAGTAGATGATGCTCTCTGGGCCAACAAACCTGTTTTATTGCAACTGGGGCTGTTTTCACTAGAGGATGCGCG
ACGTGAAAAGTCCCATCAAAAGCATCCGCAGCGATTAAAAGATTTACCCAATCTCTCTTTTCATATGGAATTGCTGTTGC
ATGAAGCGGGTATTAAGGATGTCCGGGCGTTGCAACAAATGGGGGCGAAAACGGTGTGGTTGCTTCTTCGTCAAAAACGT
AAACAGATAAGTTCCAATGTCATTTACTCATTGGAGGGAGCCATTCAGGGTGTGCATGCTGCTGCACTCCCGGCGCTAAA
GCGTCAGGAGCTGGAAGAGTGGGTGCGCAATCGCACCCACAAGAACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

54.726

99.505

0.545