Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   U0038_RS12775 Genome accession   NZ_CP139978
Coordinates   2995704..2996645 (+) Length   313 a.a.
NCBI ID   WP_002994588.1    Uniprot ID   D7VR23
Organism   Sphingobacterium spiritivorum strain HAMBI_1896     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2990704..3001645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0038_RS12755 (U0038_12760) - 2991334..2992473 (+) 1140 WP_002994593.1 cytochrome-c peroxidase -
  U0038_RS12760 (U0038_12765) - 2992545..2993054 (+) 510 WP_002994592.1 RNA polymerase sigma factor -
  U0038_RS12765 (U0038_12770) - 2993333..2994526 (+) 1194 WP_002994591.1 alpha/beta hydrolase -
  U0038_RS12770 (U0038_12775) - 2994561..2995616 (+) 1056 WP_002994590.1 YncE family protein -
  U0038_RS12775 (U0038_12780) ceuB 2995704..2996645 (+) 942 WP_002994588.1 ABC transporter permease Machinery gene
  U0038_RS12780 (U0038_12785) - 2996642..2997592 (+) 951 WP_002994586.1 iron chelate uptake ABC transporter family permease subunit -
  U0038_RS12785 (U0038_12790) - 2997589..2998350 (+) 762 WP_002994585.1 ABC transporter ATP-binding protein -
  U0038_RS12790 (U0038_12795) - 2998399..2999331 (+) 933 WP_002994582.1 siderophore ABC transporter substrate-binding protein -
  U0038_RS12795 (U0038_12800) - 2999339..3000151 (+) 813 WP_002994579.1 siderophore-interacting protein -
  U0038_RS12800 (U0038_12805) - 3000631..3000921 (-) 291 WP_002994578.1 transcriptional repressor -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34402.51 Da        Isoelectric Point: 9.7557

>NTDB_id=912202 U0038_RS12775 WP_002994588.1 2995704..2996645(+) (ceuB) [Sphingobacterium spiritivorum strain HAMBI_1896]
MRILFLIVLILLAIASLFTGVKEISLSEIFHLSEDQLLVFTISRIPRTAALILAGGGLSIVGFIMQQITQNKFVSPTTAG
SLEAAKMGILFSLLLIPQESLVYKMLFALCFTFAASMLFMAMVRRIRFRSTVFIPLIGILFGNILGAISTFFAYKHNIVQ
NVQGWSMGDFSAVLQGQYETIYIILPAVLISYVYADRFTIAGMGESFSKNLGLSYLTVVNLGLFIVSVTVSVTIVTVGAI
PFLGLIIPNIVSMIYGDNLRKNLPYTALIGAIFLLVCDILGRILIYPYEIPIGLMVGITGGIIFFLLILKRNR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=912202 U0038_RS12775 WP_002994588.1 2995704..2996645(+) (ceuB) [Sphingobacterium spiritivorum strain HAMBI_1896]
ATGCGCATTCTATTTCTTATAGTACTTATACTCCTGGCCATTGCTTCTCTTTTTACAGGAGTCAAAGAGATTTCCCTTTC
TGAGATTTTCCATTTGTCGGAAGATCAGCTGCTGGTCTTTACGATCAGCAGAATCCCACGCACAGCAGCACTGATACTGG
CAGGTGGAGGACTCAGTATTGTCGGATTTATTATGCAGCAGATTACACAAAACAAATTTGTGTCCCCAACTACAGCAGGT
TCATTAGAAGCAGCCAAAATGGGTATTCTCTTTAGTTTACTGCTTATCCCGCAGGAATCGCTGGTCTATAAAATGCTCTT
TGCACTCTGCTTTACCTTTGCAGCCAGTATGCTTTTCATGGCTATGGTAAGGCGTATCCGCTTCCGGAGTACTGTTTTTA
TTCCGCTGATCGGTATTTTGTTCGGTAATATTCTGGGTGCAATATCTACATTTTTCGCTTACAAGCACAATATTGTTCAG
AATGTACAGGGATGGTCAATGGGTGATTTTTCAGCAGTTCTTCAGGGACAATATGAAACCATCTATATTATTTTGCCGGC
AGTACTCATCAGTTATGTCTATGCAGACCGTTTCACCATAGCAGGAATGGGTGAGAGTTTTTCCAAAAACCTCGGACTCT
CCTATCTGACAGTTGTCAATCTGGGCCTGTTCATAGTTTCTGTTACCGTCAGTGTAACCATTGTCACTGTAGGCGCTATA
CCCTTTTTAGGGCTCATCATTCCCAATATTGTCAGTATGATCTATGGGGACAATCTCCGCAAAAACCTGCCTTACACAGC
ATTGATAGGGGCCATATTTCTGTTGGTCTGCGATATACTGGGCAGGATACTTATTTATCCCTACGAAATCCCTATCGGAC
TGATGGTCGGAATTACAGGGGGCATTATCTTCTTTTTACTGATCCTAAAACGCAACAGATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D7VR23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.836

97.444

0.486