Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   U0004_RS18000 Genome accession   NZ_CP139976
Coordinates   3970294..3972729 (-) Length   811 a.a.
NCBI ID   WP_070254205.1    Uniprot ID   -
Organism   Janthinobacterium lividum strain HAMBI_1919     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3965294..3977729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0004_RS17970 (U0004_17970) dcd 3965609..3966178 (-) 570 WP_034755486.1 dCTP deaminase -
  U0004_RS17975 (U0004_17975) - 3966312..3967112 (-) 801 WP_034784409.1 alpha/beta fold hydrolase -
  U0004_RS17980 (U0004_17980) - 3967171..3967866 (-) 696 WP_070254207.1 HAD family hydrolase -
  U0004_RS17985 (U0004_17985) - 3967888..3968649 (-) 762 WP_034784407.1 sulfite exporter TauE/SafE family protein -
  U0004_RS17990 (U0004_17990) - 3968801..3969724 (+) 924 WP_034784406.1 LysR family transcriptional regulator -
  U0004_RS17995 (U0004_17995) - 3969728..3970249 (-) 522 WP_070254206.1 GNAT family N-acetyltransferase -
  U0004_RS18000 (U0004_18000) comA 3970294..3972729 (-) 2436 WP_070254205.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U0004_RS18005 (U0004_18005) - 3972914..3973747 (+) 834 WP_070254204.1 class I SAM-dependent methyltransferase -
  U0004_RS18010 (U0004_18010) - 3973833..3975818 (+) 1986 WP_115057523.1 helicase-related protein -
  U0004_RS18015 (U0004_18015) - 3975822..3976295 (-) 474 WP_070254202.1 T6SS effector amidase Tae4 family protein -
  U0004_RS18020 (U0004_18020) - 3976389..3977630 (-) 1242 WP_034788533.1 PQQ-dependent sugar dehydrogenase -

Sequence

Protein


Download         Length: 811 a.a.        Molecular weight: 87378.71 Da        Isoelectric Point: 9.9943

>NTDB_id=912191 U0004_RS18000 WP_070254205.1 3970294..3972729(-) (comA) [Janthinobacterium lividum strain HAMBI_1919]
MRTLILGFAAGAAWLQTQASLPPYGGVLLWVTAGVSLLAALLLCRHARWHSWWRSTVALAAGVGLGFYWAAWLAQAAMAP
QLALADEGQDIVVTGTVASLPYRFEQGVRFNFSVEKAVGAKVPPLIALSWYAGFRDEVTNEVGDVQPGERWRLTVRLQRP
HGNANPMGFDYEAWLLEQGVRATGYVRPQPRADTPNVRLTAFVPGFGNVVEASRAALRARIVRSLEGKQYAGVIVALVVG
DQRAIPQSDWQVFNRTGVSHLISISGLHITMIAGLFALGAGTLWRRSFFTGWQLPLRLPAQKVAALAGALAAFLYVLLAG
FGVPAQRTLYMLLVVALALWLGRIASIVHILCLALGVVVLLDPWAVLWPGFWLSFGAVATMLYATAGRTTASMPPQAGRW
RRLLAAVALGAHTQYVVTVGLVPLTMLLFSQVSLVSPVANALAIPVISLVVTPLSLAGSLLPAPLSDGLLLLAHTIVQML
AQVLEWLGARRFAVWTAPAPPMWSFCWALFGTAWLLAPRGWPHRWAGMLGWLPLLTALPSSPPQGGMWVTAFDVGQGMAV
LVETPGHRLLYDTGPAYSLDSDGSSRVIVPYLRARGIAKLDGVIISHSDLDHAGGAMSLLENVQVGWLASSLFDGHPAVE
ARRALHNPYLHCMAGQSWTWEGVHFAMLHPLPASHTDISLTPNARSCTVKITAGKHSILLAGDIEAAQEAQLLARSAEGD
LAADVVLAPHHGSGTSSTPAFLNAVHPTLAIFQVGHRNRYKHPKAQVYARYGDMGIARLRTDVEGAVVLAFGDGIGVTLY
RASRPRYWHGR

Nucleotide


Download         Length: 2436 bp        

>NTDB_id=912191 U0004_RS18000 WP_070254205.1 3970294..3972729(-) (comA) [Janthinobacterium lividum strain HAMBI_1919]
ATGCGCACCCTGATACTCGGCTTTGCCGCTGGCGCCGCCTGGTTGCAGACGCAGGCAAGCTTGCCGCCGTATGGGGGCGT
GTTGCTGTGGGTGACCGCTGGCGTGTCGCTGCTGGCGGCACTGCTGCTGTGCCGCCATGCGCGCTGGCATTCCTGGTGGC
GTTCCACTGTTGCGCTTGCCGCTGGCGTGGGACTGGGCTTTTACTGGGCCGCCTGGCTGGCCCAGGCCGCCATGGCGCCG
CAACTGGCGCTGGCTGATGAAGGCCAGGACATTGTTGTCACGGGTACGGTAGCCAGCCTGCCGTACCGCTTCGAGCAGGG
CGTGCGCTTCAATTTTTCCGTGGAGAAGGCTGTTGGGGCGAAGGTGCCGCCCCTGATCGCCCTGTCCTGGTACGCAGGTT
TTCGTGATGAAGTGACGAACGAGGTGGGCGACGTGCAGCCTGGCGAACGCTGGCGCCTGACGGTGCGCTTGCAGCGTCCG
CACGGCAATGCGAACCCGATGGGTTTTGACTACGAGGCGTGGCTGCTGGAGCAGGGCGTGCGCGCCACGGGCTATGTGCG
GCCGCAGCCGCGCGCCGATACGCCGAACGTGCGCCTGACCGCTTTCGTGCCCGGCTTCGGCAACGTGGTGGAGGCCAGCC
GCGCGGCATTGCGCGCGCGCATCGTGCGCAGCCTGGAAGGCAAGCAGTATGCGGGCGTGATCGTGGCGCTGGTGGTGGGC
GACCAGCGGGCGATTCCCCAGTCGGACTGGCAAGTGTTCAACCGCACTGGCGTGAGCCATCTGATTTCGATATCCGGTCT
GCACATTACCATGATCGCGGGACTCTTTGCGCTTGGTGCCGGCACGTTGTGGCGGCGCTCGTTTTTTACCGGCTGGCAGT
TGCCACTGCGGCTGCCGGCGCAAAAGGTGGCGGCGCTGGCCGGCGCGCTGGCGGCATTTTTGTATGTGCTGCTGGCCGGC
TTTGGCGTGCCCGCGCAGCGCACCTTGTATATGTTGCTGGTGGTGGCGCTGGCCCTGTGGCTGGGACGCATCGCCAGCAT
CGTCCATATCCTGTGCCTGGCGCTGGGCGTGGTCGTGCTGCTCGATCCGTGGGCCGTGCTGTGGCCCGGCTTCTGGCTGT
CGTTCGGCGCCGTCGCCACCATGCTGTACGCAACGGCAGGGCGCACCACGGCGTCCATGCCGCCGCAGGCCGGACGCTGG
CGCCGTTTGCTTGCTGCCGTGGCGCTGGGCGCACACACGCAGTATGTGGTGACGGTGGGGCTGGTGCCGTTGACGATGCT
GCTGTTCTCGCAAGTGTCGCTCGTGTCGCCTGTCGCCAATGCGCTGGCCATTCCTGTCATCAGCCTGGTCGTCACGCCCT
TGTCGCTGGCTGGCAGCCTGCTGCCAGCGCCCCTGTCTGACGGATTGCTGCTGCTGGCGCACACCATCGTGCAGATGCTG
GCGCAGGTGCTCGAATGGCTGGGCGCGCGCCGCTTTGCCGTGTGGACGGCGCCCGCGCCGCCAATGTGGAGTTTTTGCTG
GGCATTGTTTGGCACGGCCTGGCTGCTGGCGCCACGCGGCTGGCCGCACCGCTGGGCGGGCATGCTGGGCTGGCTGCCGC
TGCTGACGGCCTTGCCGTCCAGTCCGCCGCAAGGTGGCATGTGGGTGACGGCCTTTGACGTGGGGCAGGGCATGGCCGTG
CTGGTGGAAACGCCTGGCCACCGCCTGCTGTATGACACGGGCCCTGCCTACAGCCTCGATTCCGATGGCTCCAGCCGGGT
CATCGTGCCTTATCTGCGCGCACGCGGCATAGCCAAGCTGGACGGCGTGATCATTTCCCACAGCGACCTCGATCACGCAG
GCGGCGCCATGTCTCTGTTGGAGAACGTGCAAGTGGGCTGGCTGGCCTCGTCGCTGTTCGATGGCCATCCCGCCGTCGAG
GCGCGACGGGCGTTGCACAACCCCTATCTGCACTGCATGGCGGGCCAGAGCTGGACGTGGGAAGGCGTGCACTTCGCCAT
GCTGCACCCGCTGCCCGCCAGCCATACGGACATCAGCTTGACGCCGAACGCCCGCAGTTGCACCGTGAAAATCACGGCAG
GCAAGCACTCGATCCTGCTGGCTGGCGACATCGAAGCGGCGCAAGAGGCGCAATTGCTGGCGCGCTCGGCGGAGGGCGAC
CTGGCCGCCGACGTAGTGCTGGCGCCCCATCATGGCAGCGGCACCTCGTCGACGCCGGCGTTCCTGAACGCCGTCCATCC
GACCTTGGCGATTTTCCAGGTGGGACACAGGAACCGTTATAAGCATCCGAAGGCGCAAGTGTATGCGCGCTATGGGGACA
TGGGTATTGCGCGGCTGCGCACGGATGTGGAAGGAGCGGTGGTGCTGGCGTTTGGCGACGGTATCGGCGTGACCTTGTAT
CGGGCCAGCCGGCCGCGTTACTGGCATGGGCGCTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(237-520)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-742)

Domain of unknown function (DUF4131) (DUF4131)

(26-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

46.595

100

0.481