Detailed information NTG0912187

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: U0004_RS05520
• Genome accession: NZ_CP139976
• Coordinates: 1217762..1218820 (-)
• Length: 352 a.a.
• NCBI ID: WP_034784937.1
• Uniprot ID: A0A1G8GWI1
• Organism: Janthinobacterium lividum strain HAMBI_1919
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1212762..1223820

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0004_RS05490 (U0004_05490)	-	1213445..1213792 (+)	348	WP_070258828.1	antibiotic biosynthesis monooxygenase family protein	-
U0004_RS05495 (U0004_05495)	-	1213789..1214241 (-)	453	WP_070258830.1	hypothetical protein	-
U0004_RS05500 (U0004_05500)	-	1214421..1214687 (+)	267	WP_034784922.1	hypothetical protein	-
U0004_RS05505 (U0004_05505)	rpoH	1214778..1215671 (-)	894	WP_034784924.1	RNA polymerase sigma factor RpoH	-
U0004_RS05510 (U0004_05510)	ftsX	1216093..1217013 (-)	921	WP_034784931.1	permease-like cell division protein FtsX	-
U0004_RS05515 (U0004_05515)	-	1217010..1217753 (-)	744	WP_034784934.1	cell division ATP-binding protein FtsE	-
U0004_RS05520 (U0004_05520)	pilA	1217762..1218820 (-)	1059	WP_034784937.1	signal recognition particle-docking protein FtsY	Machinery gene
U0004_RS05525 (U0004_05525)	-	1218985..1219926 (-)	942	WP_070258832.1	MerR family transcriptional regulator	-
U0004_RS05530 (U0004_05530)	-	1220131..1221441 (+)	1311	WP_070258834.1	NAD(P)/FAD-dependent oxidoreductase	-
U0004_RS05535 (U0004_05535)	-	1221431..1222228 (+)	798	WP_070258926.1	DUF1365 domain-containing protein	-
U0004_RS05540 (U0004_05540)	-	1222225..1223466 (+)	1242	WP_370452790.1	SAM-dependent methyltransferase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37382.66 Da
• Isoelectric Point: 6.8948

>NTDB_id=912187 U0004_RS05520 WP_034784937.1 1217762..1218820(-) (pilA) [Janthinobacterium lividum strain HAMBI_1919]
MFSFFKKKPIAPEAAPAEPLVLPAATPPAPQPAATPLSGAPAELVPVIVAAEPEKKSWMTRLKAGLSKTSNTLSVLFVGA
KIDDALYEELEAALLMSDAGIDATEFLLTELKKRVKEDKLLDAAAVKAALKVLLIDLLSPLEKRFELGRHKPLVMMISGV
NGAGKTTTIGKLAKHMQSNNQSVLLAAGDTFRAAAREQLMVWGERNNVTVISQESGDPAAVAYDSVQSAKARGIDVVMVD
TAGRLPTQLHLMEELKKIKRVIGKGMDGAPHETLLVIDGNTGQNALTQVKAFDDALQLSGLVITKLDGTAKGGVLAAIAR
VRPVPVYFIGIGEKIEDLQPFVAAEFVEALLG

Nucleotide

• Length: 1059 bp

>NTDB_id=912187 U0004_RS05520 WP_034784937.1 1217762..1218820(-) (pilA) [Janthinobacterium lividum strain HAMBI_1919]
ATGTTTAGTTTCTTCAAGAAAAAACCCATCGCTCCCGAGGCTGCACCAGCCGAGCCTCTCGTCCTTCCCGCCGCCACGCC
GCCTGCCCCGCAGCCTGCCGCTACGCCCCTGAGCGGTGCGCCGGCCGAGCTCGTGCCCGTGATCGTGGCCGCCGAACCCG
AGAAAAAATCGTGGATGACGCGCCTCAAGGCAGGCCTGTCGAAAACCTCGAACACCCTGTCCGTGCTGTTTGTCGGCGCG
AAAATCGACGACGCCCTATACGAAGAGCTGGAAGCGGCGCTGCTGATGTCGGACGCCGGCATCGACGCCACGGAATTCCT
GCTGACGGAATTGAAGAAAAGGGTCAAGGAAGACAAGCTGCTCGACGCGGCCGCCGTCAAGGCCGCCCTGAAAGTGCTGC
TGATCGACCTGCTCTCGCCGCTGGAAAAGCGCTTCGAGCTGGGCCGCCACAAGCCGCTGGTGATGATGATTTCCGGCGTG
AATGGCGCCGGCAAGACCACCACCATCGGCAAGCTGGCCAAGCACATGCAGTCGAACAACCAGTCCGTGCTGCTGGCCGC
GGGCGACACCTTCCGTGCCGCCGCGCGCGAGCAGCTGATGGTCTGGGGCGAGCGCAACAACGTCACCGTGATTTCGCAGG
AATCGGGCGACCCGGCCGCCGTGGCCTACGACTCCGTGCAATCGGCGAAAGCGCGCGGCATCGACGTGGTCATGGTCGAC
ACGGCAGGCCGCTTGCCGACGCAGTTGCACCTGATGGAAGAATTGAAGAAAATCAAGCGCGTGATCGGCAAGGGCATGGA
TGGCGCACCGCATGAAACCTTGCTCGTCATCGACGGCAACACGGGCCAGAACGCCCTCACGCAAGTGAAGGCCTTCGACG
ATGCCCTGCAGTTGAGCGGCCTGGTGATCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTGGCGGCAATCGCCCGC
GTACGTCCCGTGCCCGTGTATTTCATCGGCATCGGTGAGAAGATTGAAGACTTGCAGCCTTTCGTGGCTGCCGAATTTGT
CGAAGCGCTGCTCGGATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (71-131)

• SRP54-type protein, GTPase domain (SRP54) (153-352)

3D structure

• AlphaFold DB: A0A1G8GWI1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	55.425	96.875	0.537