Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   U0004_RS03585 Genome accession   NZ_CP139976
Coordinates   811272..812750 (+) Length   492 a.a.
NCBI ID   WP_070259592.1    Uniprot ID   -
Organism   Janthinobacterium lividum strain HAMBI_1919     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 806272..817750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0004_RS03560 (U0004_03560) - 807684..808718 (+) 1035 WP_070259613.1 KpsF/GutQ family sugar-phosphate isomerase -
  U0004_RS03565 (U0004_03565) - 808718..809251 (+) 534 WP_070259588.1 KdsC family phosphatase -
  U0004_RS03570 (U0004_03570) lptC 809294..809905 (+) 612 WP_070259590.1 LPS export ABC transporter periplasmic protein LptC -
  U0004_RS03575 (U0004_03575) lptA 809931..810512 (+) 582 WP_034778381.1 lipopolysaccharide transport periplasmic protein LptA -
  U0004_RS03580 (U0004_03580) lptB 810512..811267 (+) 756 WP_034778383.1 LPS export ABC transporter ATP-binding protein -
  U0004_RS03585 (U0004_03585) rpoN/rpoN1 811272..812750 (+) 1479 WP_070259592.1 RNA polymerase factor sigma-54 Machinery gene
  U0004_RS03590 (U0004_03590) hpf 812820..813182 (+) 363 WP_034778388.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  U0004_RS03595 (U0004_03595) - 813318..814403 (+) 1086 WP_070259594.1 enoyl-CoA hydratase/isomerase family protein -
  U0004_RS03600 (U0004_03600) rapZ 814404..815267 (-) 864 WP_035824128.1 RNase adapter RapZ -
  U0004_RS03605 (U0004_03605) hprK 815589..816524 (-) 936 WP_034753337.1 HPr(Ser) kinase/phosphatase -
  U0004_RS03610 (U0004_03610) - 816564..817046 (-) 483 WP_034753339.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54569.23 Da        Isoelectric Point: 5.1050

>NTDB_id=912182 U0004_RS03585 WP_070259592.1 811272..812750(+) (rpoN/rpoN1) [Janthinobacterium lividum strain HAMBI_1919]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDRSLRLLSDGALSSTAAPAEAPPQPP
GQEAPTAPAEAETFDGDAGEGPAAADGGDSDWSEASRGKAPDDEDSRPQLEAHHCTLREHLMEQMRVTVLELRDRALVEL
IIDALDDNGYLEESLDDILARLPEELEIDADEMRTALSLLQSFDPPGVGARNASECLALQIKRLPHIAMVTRRMALVIVE
KHLAWFAQRDFNKLKKALDCDDEDLREAQTVIRQCNPHPGAVFASDVSDYVVPDVVVKRARNGWQVTLNNDVMPRLRVNA
MYANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRV
TTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREA
LKIPPVSLRKCL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=912182 U0004_RS03585 WP_070259592.1 811272..812750(+) (rpoN/rpoN1) [Janthinobacterium lividum strain HAMBI_1919]
ATGAAACAATCATTGCAGCTGCGCACTTCGCAGCACCTGGCACTGACGCCGCAGTTGCAGCAATCGATACGCCTGTTGCA
ATTGTCTACCCTGGAATTGCATCAGGAACTAGAGCAATTGCTGACGGACAATCCCTTGCTCGAGCGCCTCGATGATCCGC
TCGACCGCTCGCTGCGCCTGCTGTCCGATGGCGCCTTGAGTTCCACGGCAGCGCCGGCCGAAGCGCCGCCCCAGCCGCCA
GGCCAGGAAGCGCCCACAGCGCCGGCCGAAGCGGAAACCTTTGACGGCGATGCCGGCGAGGGTCCTGCCGCCGCGGATGG
CGGCGACAGCGACTGGAGCGAGGCGAGCCGCGGCAAGGCGCCCGACGACGAGGATTCGCGCCCGCAACTGGAGGCCCATC
ACTGTACCCTGCGCGAACACCTGATGGAGCAGATGCGCGTGACGGTACTCGAATTGCGCGACCGCGCGCTGGTCGAGCTG
ATCATCGATGCGCTCGACGACAATGGCTACCTGGAAGAGTCGCTCGACGACATCCTGGCGCGCCTGCCGGAAGAGCTGGA
AATCGACGCTGACGAGATGCGCACGGCCTTGTCTCTCTTGCAAAGTTTCGATCCGCCCGGCGTGGGCGCGCGCAATGCCT
CCGAATGCCTGGCGCTGCAAATCAAGCGTTTGCCGCACATCGCCATGGTGACGCGCCGCATGGCCCTCGTCATCGTGGAA
AAGCACCTGGCCTGGTTTGCCCAGCGCGATTTCAACAAGCTGAAAAAAGCCCTCGATTGCGACGATGAAGACTTGCGCGA
AGCGCAGACGGTGATTCGCCAGTGCAATCCGCATCCGGGCGCCGTGTTCGCCTCGGACGTGTCCGATTACGTGGTGCCCG
ACGTCGTCGTCAAGCGCGCGCGCAATGGCTGGCAAGTCACGCTGAACAACGATGTCATGCCGCGCCTGCGCGTCAATGCC
ATGTACGCCAACTTGCTCAAGCAGGGCAAGGGCGAGGGCGCCATGGGCGCACAGTTGCAGGAAGCCAAGTGGCTGATCAA
GAATATGCGCCAGCGCTTCGACACGATCCTGCGCGTGGCGCAGGCGATAGTAGAAAGACAAAAGAACTTTTTCTCGCATG
GGGCCGTTGCCATGCGTCCCCTTGTGCTCCGTGAAATAGCTGATACACTGGGTTTACACGAGAGTACTATCTCGCGGGTA
ACAACTCAAAAGTACATGCTGACCCCGCACGGCATGTTCGAGTTGAAATATTTCTTTGGTAGCCACGTCGCCACCGAAGC
GGGGGGCGAAGCGTCATCGACGGCGATACGGGCATTGATCGTGCAACTGACAGGAGCAGAAGACCCTAAAAATCCTTTAT
CCGACAGTAAGATTGCGGACATGCTGGGGGAACAAGGCATGGTGATTGCGCGACGTACTGTTGCCAAATACCGGGAAGCG
TTGAAAATTCCGCCAGTGAGCCTGCGTAAGTGTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-490)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.904

100

0.63