Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   U0022_RS01815 Genome accession   NZ_CP139974
Coordinates   398034..399473 (+) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas caviae strain HAMBI_1972     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 393034..404473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0022_RS01785 (U0022_01785) mlaF 393612..394412 (-) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -
  U0022_RS01790 (U0022_01790) - 394619..395614 (+) 996 WP_029314845.1 KpsF/GutQ family sugar-phosphate isomerase -
  U0022_RS01795 (U0022_01795) kdsC 395614..396168 (+) 555 WP_042015859.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  U0022_RS01800 (U0022_01800) lptC 396165..396725 (+) 561 WP_042015856.1 LPS export ABC transporter periplasmic protein LptC -
  U0022_RS01805 (U0022_01805) lptA 396712..397230 (+) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  U0022_RS01810 (U0022_01810) lptB 397243..397968 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  U0022_RS01815 (U0022_01815) rpoN/rpoN1 398034..399473 (+) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  U0022_RS01820 (U0022_01820) hpf 399494..399781 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  U0022_RS01825 (U0022_01825) ptsN 399784..400230 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  U0022_RS01830 (U0022_01830) rapZ 400271..401137 (+) 867 WP_010675869.1 RNase adapter RapZ -
  U0022_RS01835 (U0022_01835) npr 401158..401430 (+) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  U0022_RS01840 (U0022_01840) - 401446..403350 (-) 1905 WP_042015854.1 BglG family transcription antiterminator -
  U0022_RS01845 (U0022_01845) dagF 403454..404194 (-) 741 WP_042015054.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=912142 U0022_RS01815 WP_039040474.1 398034..399473(+) (rpoN/rpoN1) [Aeromonas caviae strain HAMBI_1972]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=912142 U0022_RS01815 WP_039040474.1 398034..399473(+) (rpoN/rpoN1) [Aeromonas caviae strain HAMBI_1972]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGTCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATAGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGTAGCAAGTGGGTGGTTGAACTCAATCCGG
ATTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482