Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   U0034_RS12080 Genome accession   NZ_CP139970
Coordinates   2683793..2685001 (-) Length   402 a.a.
NCBI ID   WP_085227844.1    Uniprot ID   A0A1X7ER18
Organism   Trinickia caryophylli strain HAMBI_2159     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2678793..2690001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0034_RS12060 (U0034_12050) leuA 2679009..2680664 (-) 1656 WP_085227840.1 2-isopropylmalate synthase -
  U0034_RS12065 (U0034_12055) ybiB 2681067..2682035 (-) 969 WP_085227841.1 DNA-binding protein YbiB -
  U0034_RS12070 (U0034_12060) - 2682313..2683026 (+) 714 WP_085227842.1 fumarylacetoacetate hydrolase family protein -
  U0034_RS12075 (U0034_12065) maiA 2683054..2683698 (+) 645 WP_085227843.1 maleylacetoacetate isomerase -
  U0034_RS12080 (U0034_12070) pilA 2683793..2685001 (-) 1209 WP_085227844.1 signal recognition particle-docking protein FtsY Machinery gene
  U0034_RS12085 (U0034_12075) rsmD 2685249..2685863 (+) 615 WP_085227845.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  U0034_RS12090 (U0034_12080) coaD 2685955..2686458 (+) 504 WP_085227846.1 pantetheine-phosphate adenylyltransferase -
  U0034_RS12095 (U0034_12085) - 2686680..2686940 (+) 261 WP_085227847.1 YfhL family 4Fe-4S dicluster ferredoxin -
  U0034_RS12100 (U0034_12090) hisC 2686985..2688055 (-) 1071 WP_085227848.1 histidinol-phosphate transaminase -
  U0034_RS12105 (U0034_12095) pth 2688116..2688718 (-) 603 WP_085227849.1 aminoacyl-tRNA hydrolase -
  U0034_RS12110 (U0034_12100) - 2688838..2689449 (-) 612 WP_085228102.1 50S ribosomal protein L25/general stress protein Ctc -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 42344.52 Da        Isoelectric Point: 5.1600

>NTDB_id=912099 U0034_RS12080 WP_085227844.1 2683793..2685001(-) (pilA) [Trinickia caryophylli strain HAMBI_2159]
MFSFFKRFKGSKSPETVEEQHSPAEAPAAAPTATVPAEPQPPAAPAPSPAPAAQTPQIPQAPAPAPASTSVSQQSTAPAQ
PAAASGIEQEEVEIVPPPAPEPAAKQSWLARLRSGLSKTSAGITGIFVGTKIDDALYEELETALLMSDAGVEATEYLLRA
LREKVREDRLTDPQQVKTALRSLLVDLLKPLEKSLMLGRAQPMVMMIAGVNGAGKTTSIGKLAKHLQSFQQSVLLAAGDT
FRAAAREQLAIWGQRNNVTVVAQESGDPAAVIFDAVTAARARGIDVVMADTAGRLPTQLHLMEELRKVKRVIGKAMDDAP
HEVLLVIDANTGQNALAQVKAFDDALSLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEEFADAL
LG

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=912099 U0034_RS12080 WP_085227844.1 2683793..2685001(-) (pilA) [Trinickia caryophylli strain HAMBI_2159]
ATGTTCAGTTTTTTCAAGCGATTCAAGGGCTCGAAGTCGCCCGAAACCGTCGAGGAACAACACTCGCCCGCCGAGGCGCC
GGCCGCCGCCCCCACGGCAACGGTGCCCGCCGAGCCGCAGCCGCCGGCTGCACCTGCACCCTCGCCGGCCCCCGCCGCTC
AAACCCCTCAAATCCCTCAGGCTCCTGCGCCTGCGCCCGCTTCCACGTCGGTCTCGCAGCAAAGCACAGCACCCGCACAG
CCCGCCGCGGCGTCCGGCATCGAGCAAGAGGAAGTCGAGATCGTACCGCCCCCGGCACCCGAGCCGGCTGCCAAGCAGTC
GTGGCTCGCGCGTCTGCGCTCGGGGCTCTCGAAAACGAGCGCCGGGATCACAGGCATCTTCGTCGGCACCAAGATCGACG
ACGCGCTCTATGAAGAACTCGAAACGGCACTGCTGATGTCGGATGCAGGCGTGGAGGCAACCGAATACCTGCTCCGCGCG
TTGCGCGAAAAGGTCCGCGAAGACCGGCTGACGGACCCGCAGCAAGTCAAAACGGCGCTGCGCTCGCTGCTCGTCGATCT
GCTGAAGCCGCTCGAGAAATCGTTGATGCTGGGCCGCGCCCAGCCGATGGTCATGATGATCGCAGGCGTGAACGGCGCGG
GTAAAACCACGAGCATCGGCAAGCTCGCCAAGCATCTGCAGAGCTTTCAGCAGTCGGTGCTGCTCGCGGCCGGTGACACG
TTTCGCGCCGCAGCGCGCGAGCAGCTCGCCATCTGGGGCCAGCGCAACAACGTGACGGTCGTCGCGCAGGAAAGCGGCGA
TCCGGCTGCCGTCATCTTCGACGCGGTCACAGCGGCGCGCGCGCGCGGCATCGACGTGGTGATGGCCGATACGGCGGGGC
GCCTGCCCACGCAGTTGCACCTGATGGAAGAGCTACGCAAGGTCAAACGCGTGATCGGCAAGGCCATGGACGACGCCCCG
CACGAGGTCCTGCTCGTCATCGATGCCAACACCGGGCAAAACGCGCTCGCACAGGTGAAGGCGTTCGACGATGCGCTCTC
GCTTACGGGCCTCATCGTCACGAAGCTCGACGGCACCGCCAAAGGCGGTATTCTCGCCGCCATCGCGCGCCAGCGCCCCG
TGCCTGTCTATTTCATCGGCGTGGGCGAAAAAGTCGAAGATCTGCAACCGTTCAGCGCGGAGGAATTTGCCGACGCGCTG
CTCGGCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(122-182)

SRP54-type protein, GTPase domain (SRP54)

(203-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X7ER18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.683

100

0.535