Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   U0029_RS14650 Genome accession   NZ_CP139969
Coordinates   3165929..3167236 (-) Length   435 a.a.
NCBI ID   WP_039052211.1    Uniprot ID   -
Organism   Bordetella avium strain HAMBI_2160     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3160929..3172236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0029_RS14630 (U0029_14645) ribBA 3161424..3162590 (-) 1167 WP_114852718.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  U0029_RS14635 (U0029_14650) - 3162943..3163218 (-) 276 WP_127812009.1 hypothetical protein -
  U0029_RS14640 (U0029_14655) - 3163224..3164021 (+) 798 WP_012416263.1 IclR family transcriptional regulator -
  U0029_RS14645 (U0029_14660) - 3164289..3165875 (+) 1587 WP_114851749.1 CYTH and CHAD domain-containing protein -
  U0029_RS14650 (U0029_14665) pilA 3165929..3167236 (-) 1308 WP_039052211.1 signal recognition particle-docking protein FtsY Machinery gene
  U0029_RS14655 (U0029_14670) rsmD 3167342..3167962 (+) 621 WP_012416260.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  U0029_RS14660 (U0029_14675) coaD 3167984..3168487 (+) 504 WP_114851748.1 pantetheine-phosphate adenylyltransferase -
  U0029_RS14665 (U0029_14680) - 3168539..3168793 (+) 255 WP_012416258.1 YfhL family 4Fe-4S dicluster ferredoxin -
  U0029_RS14670 (U0029_14685) - 3168790..3169995 (+) 1206 WP_012416257.1 benzoate/H(+) symporter BenE family transporter -
  U0029_RS14675 (U0029_14690) - 3170002..3170406 (-) 405 WP_114851747.1 MOSC N-terminal beta barrel domain-containing protein -

Sequence

Protein


Download         Length: 435 a.a.        Molecular weight: 44471.41 Da        Isoelectric Point: 6.5180

>NTDB_id=912087 U0029_RS14650 WP_039052211.1 3165929..3167236(-) (pilA) [Bordetella avium strain HAMBI_2160]
MFSFFKKKTPPPAAPATPAPPPEPVAQPAEPVSPPSIAPAAPPVPAVAPEPPVAVPPAAAPPRPPVAAEPVAVQTAAPAS
PAMPAAPAPLVAEPVAAEAVAALAPPSPPAAQAPAPAAPAPEVPAPEVPAPKKASWLSRLKQGLARTGQSIGGIFVGVKV
DENLFEELESALIMADAGIEATDKLLTALRARVKKERIEDPAQVKAALRQLLADHLKPLERQFDLKRAQPLVVMIAGVNG
AGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVIAQDGGDPAAVAFDAVNAGRARAAGVVMIDTA
GRLPTQLHLMEELKKIRRVIGKADAAAPHEVLLVIDGNTGQNALAQIRAFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGS
QGVRPVPVYWIGVGEGLEDLQPFVAEEFASALLAD

Nucleotide


Download         Length: 1308 bp        

>NTDB_id=912087 U0029_RS14650 WP_039052211.1 3165929..3167236(-) (pilA) [Bordetella avium strain HAMBI_2160]
ATGTTCAGCTTCTTCAAGAAAAAGACCCCTCCGCCCGCCGCGCCAGCCACGCCCGCGCCGCCGCCGGAGCCCGTCGCTCA
GCCCGCCGAGCCTGTCTCGCCGCCTTCCATCGCGCCCGCGGCGCCGCCTGTCCCGGCGGTGGCCCCCGAGCCGCCTGTGG
CGGTTCCGCCTGCTGCCGCGCCGCCTCGCCCGCCGGTCGCGGCCGAGCCCGTGGCGGTTCAGACTGCTGCGCCGGCCTCG
CCCGCGATGCCTGCGGCACCCGCGCCGCTTGTGGCCGAACCCGTAGCCGCCGAAGCGGTGGCGGCCCTTGCGCCGCCCAG
CCCGCCTGCGGCCCAAGCTCCCGCGCCCGCAGCACCGGCACCCGAAGTCCCCGCCCCCGAAGTTCCTGCACCCAAGAAGG
CCTCCTGGCTCAGCCGGCTCAAGCAGGGCCTGGCCCGCACCGGGCAAAGCATCGGCGGCATTTTTGTTGGCGTCAAAGTC
GATGAAAACCTGTTCGAGGAGCTGGAGTCGGCCCTCATCATGGCCGATGCCGGTATCGAAGCGACCGACAAATTGCTGAC
CGCGCTGCGAGCCCGAGTCAAGAAAGAGCGCATCGAGGACCCTGCGCAGGTCAAGGCCGCTTTGCGCCAGTTGCTGGCCG
ATCACCTCAAACCGCTTGAACGCCAGTTCGACCTCAAGCGTGCGCAGCCGCTGGTCGTGATGATCGCTGGGGTGAACGGC
GCGGGTAAAACCACGTCTATCGGCAAGTTGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTTTTGCTGGCTGCGGGAGA
CACGTTCCGCGCCGCCGCGCGCGAGCAACTCGTCGAGTGGGGCAGCCGCAACAACGTCACCGTCATCGCCCAAGATGGCG
GAGATCCGGCCGCCGTGGCCTTTGACGCCGTCAACGCCGGTCGCGCACGCGCTGCAGGCGTGGTCATGATCGACACCGCC
GGGCGCCTGCCTACGCAACTGCATTTGATGGAAGAGCTCAAGAAAATCCGTCGCGTTATCGGCAAGGCCGACGCCGCCGC
GCCGCATGAGGTCTTGCTGGTCATCGACGGCAATACCGGGCAGAACGCCCTGGCTCAGATTCGCGCCTTTGATGCGGCCA
TTCAGCTCACCGGCCTGGTCGTCACCAAGCTCGATGGCACCGCCAAGGGCGGCACGCTGGCGGCTGTCGCCGCGGGCAGC
CAGGGCGTGCGCCCTGTGCCGGTTTACTGGATAGGCGTGGGCGAAGGTCTGGAAGACCTCCAACCCTTTGTGGCCGAGGA
GTTTGCCTCGGCCTTGCTGGCAGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(231-433)

SRP54-type protein, helical bundle domain (SRP54_N)

(149-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.64

100

0.487