Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L6419_RS09015 Genome accession   NZ_AP025332
Coordinates   1902876..1904240 (-) Length   454 a.a.
NCBI ID   WP_237375796.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-184     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897876..1909240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6419_RS08990 (GUT184_17400) gltX 1898156..1899610 (-) 1455 WP_155969722.1 glutamate--tRNA ligase -
  L6419_RS08995 (GUT184_17410) - 1899766..1900455 (-) 690 WP_024532986.1 LiaF transmembrane domain-containing protein -
  L6419_RS09000 (GUT184_17420) - 1900461..1900907 (-) 447 WP_155962051.1 LytTR family DNA-binding domain-containing protein -
  L6419_RS09005 (GUT184_17430) - 1901427..1902146 (-) 720 WP_024532696.1 TIGR00266 family protein -
  L6419_RS09010 (GUT184_17440) - 1902257..1902751 (-) 495 WP_024532695.1 beta-class carbonic anhydrase -
  L6419_RS09015 (GUT184_17450) radA 1902876..1904240 (-) 1365 WP_237375796.1 DNA repair protein RadA Machinery gene
  L6419_RS09020 (GUT184_17460) - 1904763..1905206 (-) 444 WP_024532693.1 dUTP diphosphatase -
  L6419_RS09025 (GUT184_17470) - 1905643..1906497 (-) 855 WP_237375367.1 helix-turn-helix domain-containing protein -
  L6419_RS09030 (GUT184_17480) - 1906831..1907451 (+) 621 WP_237375368.1 hypothetical protein -
  L6419_RS09035 (GUT184_17490) - 1907821..1908114 (+) 294 WP_156021138.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49734.26 Da        Isoelectric Point: 6.8567

>NTDB_id=91206 L6419_RS09015 WP_237375796.1 1902876..1904240(-) (radA) [Streptococcus ruminantium strain GUT-184]
MIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVAVTEVKNERVSLTGEKTRPMKLNEVSSIQVSRTKTSMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRKEI
EKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGE
RQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVINPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGEI
RRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEIMAVGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=91206 L6419_RS09015 WP_237375796.1 1902876..1904240(-) (radA) [Streptococcus ruminantium strain GUT-184]
ATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAATACCACTCGCCCAAATACCTAGGGCGCTGTCCCAA
CTGTGGTTCTTGGTCGTCCTTTGTAGAGGAAGTGGCAGTTACAGAAGTTAAGAATGAGCGAGTCAGTTTGACAGGCGAGA
AGACCCGACCAATGAAGCTAAATGAAGTTTCCTCTATCCAAGTGTCTCGTACAAAGACTAGTATGGAAGAGTTCAATCGC
GTTCTGGGAGGAGGTGTAGTGCCAGGGAGTTTGGTTCTTATTGGTGGAGATCCGGGTATAGGCAAGTCCACCTTGCTCTT
GCAGGTTTCAACTCAGCTATCAACTATTGGCACAGTTCTTTATGTATCAGGAGAAGAGTCTGCCCAACAAATCAAGCTAC
GAGCAGAGCGCTTAGGCGATATTGACAGCGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTATCCGCAAGGAGATT
GAAAAAATCAAGCCGGATTTTTTGATTATTGATTCTATTCAGACGATTATGAGTCCGGATATTTCTAGCGTGCAGGGATC
AGTCAGTCAGGTGCGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAATAATATCGCAACCTTTATTGTCGGTC
ACATGACCAAGGAAGGAACTCTTGCAGGACCGCGTACTCTAGAACACATGGTAGATACGGTGCTTTATTTTGAGGGAGAG
CGCCAGCATACCTTCCGCATCTTGCGAGCGGTCAAAAATCGTTTTGGATCAACCAATGAGATCGGAATTTTTGAAATGCA
GTCTCAGGGCTTGGTAGAGGTTATCAATCCTAGCGAAGTCTTTTTGGAAGAACGTTTGGATGGAGCGACAGGTTCTGCCA
TTGTTGTTACCATGGAGGGAACCAGACCTATCTTAGCAGAAGTACAAGCCTTGGTGACTCCGACCATGTTTGGTAATGCC
AAGCGGACGACAACAGGACTAGACTTCAATCGGGCTAGCTTAATTATGGCAGTTTTGGAAAAAAGGGCAGGTCTACTTTT
ACAAAATCAAGATGCTTACCTAAAATCAGCAGGTGGTGTCAAGTTAGATGAGCCGGCAATTGATCTTGCAGTAGCAGTTG
CCCTCGCTTCCAGCTACAAGGATAAGCCTACTAATCCTCAGGAGTGTTTTATCGGGGAAATCGGTCTGACAGGAGAAATA
CGCCGTGTCAATCGGATCGAACAGCGCATCAATGAAGCGGCTAAGTTGGGATTTACAAAAGTCTATGCTCCAAAAAATTC
CTTGACAGGTATCAAGGTCCCTAAAGAAATTATGGCTGTAGGAGTGACAACAATTGGTGAAGTTTTGCAAAAAGTATTTA
ATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-219)

Subunit ChlI of Mg-chelatase (ChlI)

(362-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

90.044

99.559

0.896
  radA Streptococcus pneumoniae D39

90.044

99.559

0.896
  radA Streptococcus pneumoniae R6

90.044

99.559

0.896
  radA Streptococcus pneumoniae TIGR4

90.044

99.559

0.896
  radA Streptococcus mitis NCTC 12261

90.044

99.559

0.896
  radA Streptococcus mitis SK321

89.823

99.559

0.894
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

99.78

0.621

Multiple sequence alignment