Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   U0036_RS01590 Genome accession   NZ_CP139967
Coordinates   338105..339583 (-) Length   492 a.a.
NCBI ID   WP_063236683.1    Uniprot ID   -
Organism   Cupriavidus oxalaticus strain HAMBI_2164     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333105..344583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0036_RS01560 (U0036_01565) - 333543..334211 (-) 669 WP_063236679.1 LON peptidase substrate-binding domain-containing protein -
  U0036_RS01565 (U0036_01570) rapZ 334321..335208 (-) 888 WP_063236680.1 RNase adapter RapZ -
  U0036_RS01570 (U0036_01575) - 335334..335660 (-) 327 WP_063236681.1 PsiF family protein -
  U0036_RS01575 (U0036_01580) hprK 335838..336809 (-) 972 WP_063236682.1 HPr(Ser) kinase/phosphatase -
  U0036_RS01580 (U0036_01585) ptsN 336889..337344 (-) 456 WP_029046777.1 PTS IIA-like nitrogen regulatory protein PtsN -
  U0036_RS01585 (U0036_01590) hpf 337706..338056 (-) 351 WP_029046778.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  U0036_RS01590 (U0036_01595) rpoN/rpoN1 338105..339583 (-) 1479 WP_063236683.1 RNA polymerase factor sigma-54 Machinery gene
  U0036_RS01595 (U0036_01600) lptB 339739..340539 (-) 801 WP_063236684.1 LPS export ABC transporter ATP-binding protein -
  U0036_RS01600 (U0036_01605) lptA 340594..341241 (-) 648 WP_063236685.1 lipopolysaccharide transport periplasmic protein LptA -
  U0036_RS01605 (U0036_01610) lptC 341362..341991 (-) 630 WP_063236686.1 LPS export ABC transporter periplasmic protein LptC -
  U0036_RS01610 (U0036_01615) - 342035..343018 (-) 984 WP_063236752.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54780.12 Da        Isoelectric Point: 4.8667

>NTDB_id=912058 U0036_RS01590 WP_063236683.1 338105..339583(-) (rpoN/rpoN1) [Cupriavidus oxalaticus strain HAMBI_2164]
MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALTENPLLERENDWIESPLRVAADGSVNVQSAPAPAPAEPQ
GNGEARSDGAADDDSYGDSNGGEDYGGDWSLDDFARRPQGDEDEKTPMQLREAEPTLREYLMEQLTPLKISVRDKGLAIF
LIESLDDDGYLGATLEEICAELPEELEFEIEELQAMLTLLQSFDPPGVGARNAAECLGLQLRRLQHPQRELALNIVHNHL
ELLAVRDYTRLKKALQVDEPALKAAHELIRSLAPYPGHAYSRPEADFVVPDVFVRKSGSGWIAQLNPDVMPRLRINDMYA
QILRGAKGESGTAGLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKNFFTHGEIAMRPLVLREIADTLGLHESTISRV
TTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLIGAEDPRNPLSDSRIAELLGEQGFVVARRTVAKYREA
LKIPAVNLRKSL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=912058 U0036_RS01590 WP_063236683.1 338105..339583(-) (rpoN/rpoN1) [Cupriavidus oxalaticus strain HAMBI_2164]
ATGAAACCGTCGCTACAGCTCCGCCTCTCCCAGCACCTGGCACTGACACCGCAACTGCAGCAGTCGATCAGGCTGTTGCA
GCTTTCAACGCTGGAATTGCAGCAGGAAGTCGAACAGGCGCTCACGGAAAACCCCCTGCTCGAACGCGAGAACGACTGGA
TCGAAAGCCCGCTGCGCGTGGCCGCCGATGGTTCGGTCAACGTGCAGAGCGCGCCGGCGCCGGCACCCGCCGAACCGCAA
GGCAACGGCGAGGCACGCAGCGATGGCGCGGCCGACGACGACAGCTACGGCGACAGCAATGGCGGCGAAGACTATGGCGG
CGACTGGAGCCTGGACGACTTCGCGCGCCGCCCGCAAGGCGACGAAGACGAGAAGACGCCGATGCAGCTGCGCGAAGCCG
AGCCCACGCTGCGCGAATACCTGATGGAACAGCTCACGCCGCTGAAGATCTCGGTGCGCGACAAGGGCCTGGCCATCTTC
CTGATCGAATCGCTCGACGACGACGGCTACCTCGGTGCAACGCTCGAAGAGATCTGCGCCGAACTGCCGGAAGAACTCGA
GTTCGAGATCGAGGAATTGCAGGCGATGCTAACGCTGCTGCAAAGCTTCGACCCGCCGGGCGTGGGCGCGCGCAACGCGG
CCGAGTGCCTGGGCCTGCAATTGCGCCGGCTGCAGCACCCGCAGCGCGAACTGGCGCTGAACATCGTGCACAACCACCTC
GAGCTGCTGGCGGTGCGCGACTACACGCGCCTGAAAAAAGCCCTGCAGGTAGACGAGCCTGCACTCAAGGCCGCTCACGA
ACTGATCCGCTCGCTGGCGCCCTATCCGGGCCACGCCTACAGCCGCCCCGAAGCCGACTTTGTGGTGCCCGATGTGTTCG
TGCGCAAGAGCGGCAGCGGCTGGATCGCGCAGCTCAATCCGGATGTGATGCCGAGGCTGCGCATCAACGACATGTACGCG
CAGATCCTGCGCGGCGCGAAAGGCGAGTCGGGTACCGCGGGCCTGCAGCAGAAACTGCAGGAAGCACGCTGGCTGATCAA
GAATATCCAGCAAAGGTTCGACACGATCCTGCGTGTCTCACAGGCCATTGTCGAGCGTCAAAAGAACTTTTTCACGCACG
GCGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAGATTGCCGATACACTGGGATTACACGAGTCAACCATCTCCCGGGTG
ACGACCAATAAATACATGGCAACGCCGATGGGTACTTTCGAACTGAAGTACTTCTTCGGCAGCCACGTGTCCACCGAAAC
CGGTGGCGCGGCTTCATCAACGGCCATCCGCGCCTTGATCAAGCAACTGATAGGAGCCGAAGACCCGAGGAATCCCCTTT
CCGACAGTCGCATCGCCGAACTGCTGGGTGAGCAAGGCTTCGTTGTCGCACGTCGCACCGTTGCCAAATATCGCGAAGCC
CTGAAGATCCCCGCAGTGAATCTCCGCAAGTCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(335-490)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

79.242

100

0.807