Detailed information NTG0912052

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: U0042_RS21035
• Genome accession: NZ_CP139965
• Coordinates: 4672878..4674386 (-)
• Length: 502 a.a.
• NCBI ID: WP_114809308.1
• Uniprot ID: -
• Organism: Paraburkholderia kururiensis strain HAMBI 2494
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4667878..4679386

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0042_RS21010 (U0042_21015)	-	4668758..4669393 (-)	636	WP_114809311.1	LON peptidase substrate-binding domain-containing protein	-
U0042_RS21015 (U0042_21020)	rapZ	4669475..4670368 (-)	894	WP_114809310.1	RNase adapter RapZ	-
U0042_RS21020 (U0042_21025)	hprK	4670435..4671403 (-)	969	WP_017772650.1	HPr(Ser) kinase/phosphatase	-
U0042_RS21025 (U0042_21030)	ptsN	4671556..4672071 (-)	516	WP_017772651.1	PTS IIA-like nitrogen regulatory protein PtsN	-
U0042_RS21030 (U0042_21035)	hpf	4672347..4672706 (-)	360	WP_114809309.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
U0042_RS21035 (U0042_21040)	rpoN/rpoN1	4672878..4674386 (-)	1509	WP_114809308.1	RNA polymerase factor sigma-54	Machinery gene
U0042_RS21040 (U0042_21045)	lptB	4674677..4675459 (-)	783	WP_114809307.1	LPS export ABC transporter ATP-binding protein	-
U0042_RS21045 (U0042_21050)	lptA	4675456..4676133 (-)	678	WP_114809306.1	lipopolysaccharide transport periplasmic protein LptA	-
U0042_RS21050 (U0042_21055)	lptC	4676166..4676765 (-)	600	WP_114809305.1	LPS export ABC transporter periplasmic protein LptC	-
U0042_RS21055 (U0042_21060)	-	4676762..4677310 (-)	549	WP_114809304.1	KdsC family phosphatase	-
U0042_RS21060 (U0042_21065)	kdsD	4677310..4678293 (-)	984	WP_114809303.1	arabinose 5-phosphate isomerase KdsD	-

Sequence

Protein

• Length: 502 a.a.
• Molecular weight: 54948.08 Da
• Isoelectric Point: 5.0002

>NTDB_id=912052 U0042_RS21035 WP_114809308.1 4672878..4674386(-) (rpoN/rpoN1) [Paraburkholderia kururiensis strain HAMBI 2494]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVATAIAQNPLLENEDDWIASPLRVAADGSVIAQTPTSSAPEPMS
AAPSSSSSAESSESGEPASVDEYNGLAGDANGDASQWNLDDYGRSGTASDDDDLPPLQIHESSTSLRDYLMAQLRVTQAS
QRDRALITFLIESLDDEGYLTATCEEILADMPAELEVDADELNAALALLQSFDPPGVGARSASECLKLQLLRLDPSPTRT
LALEIVAHHLELLAARDFTRLRKHLKASDDELRDAHALIRSLEPFPGAAYGKAEADYVVPDVIVKKTAQGWHAELNPEVV
PKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFVHGEIAMRPLVLREIADTL
GLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAENPKSPLSDSRIAELLAEQGFVVA
RRTVAKYREALKIPAVNLRKSL

Nucleotide

• Length: 1509 bp

>NTDB_id=912052 U0042_RS21035 WP_114809308.1 4672878..4674386(-) (rpoN/rpoN1) [Paraburkholderia kururiensis strain HAMBI 2494]
ATGAAAGCCAGCCTCCAACTTCGCCTGTCGCAGCATCTTGCGCTGACCCCTCAACTGCAACAGTCCATCCGGCTGCTGCA
GCTGTCTACGCTCGAATTGCAGCAGGAAGTCGCGACGGCGATCGCGCAGAACCCCCTCCTCGAAAACGAAGACGACTGGA
TCGCCAGCCCCTTGCGGGTGGCAGCGGACGGCTCCGTGATCGCGCAAACGCCCACGTCTTCGGCGCCCGAGCCGATGTCC
GCGGCACCCTCTTCGTCGTCCTCGGCAGAGAGTTCGGAAAGCGGCGAACCGGCGAGCGTCGACGAATACAACGGCCTTGC
CGGCGATGCCAACGGCGACGCGTCGCAGTGGAATCTCGACGACTATGGCCGCTCCGGCACGGCATCCGACGACGACGACC
TCCCACCGCTGCAGATCCACGAATCCAGCACGTCGCTGCGCGACTATCTGATGGCGCAGTTGCGCGTCACGCAGGCAAGC
CAGCGTGACCGTGCGCTCATCACGTTCCTCATCGAATCGCTCGACGACGAAGGTTATCTCACCGCAACGTGTGAAGAAAT
CCTCGCCGACATGCCGGCCGAGCTTGAAGTGGACGCCGACGAATTGAACGCGGCCCTCGCGTTGCTGCAAAGCTTCGACC
CACCCGGCGTCGGTGCGCGTTCGGCATCGGAATGTCTGAAGCTGCAATTGCTTCGGCTCGATCCGTCGCCCACGCGCACG
CTCGCGCTCGAAATCGTCGCGCACCATCTCGAGTTGCTGGCGGCACGCGACTTCACGCGTCTGCGCAAACATCTGAAGGC
AAGCGACGACGAACTACGCGATGCCCATGCACTGATCCGCTCGCTCGAACCATTCCCTGGTGCTGCTTACGGCAAGGCCG
AGGCCGACTACGTCGTGCCCGACGTGATCGTGAAGAAAACCGCACAAGGATGGCATGCCGAACTGAATCCCGAGGTGGTG
CCGAAGCTGCGCATCAATCATCTGTACGCGAACATTCTGCGCAACAACCGCGGCGACCCAGGCAGCGGCTCGTTGCGCCA
GCAACTGCAGGAAGCGCGCTGGTTGATCAAAAATATTCAGCAGCGCTTCGAAACAATCCTGCGTGTTGCGCAGGCTATTG
TGGAGCGTCAGAAGAACTTTTTTGTGCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTG
GGCTTACACGAGTCAACTGTCTCGCGTGTGACAACCGGCAAGTACATGCTCACCCCATTTGGGACGCTTGAATTTAAGTA
CTTCTTTGGATCGCACGTTTCGACGGATACGGGAGGCGCGGCCTCATCAACGGCCATACGCGCGCTCATCAAGCAACTGA
TAGGAGCAGAGAACCCGAAATCCCCTCTCTCAGACAGCCGCATAGCCGAACTGCTGGCGGAACAGGGCTTCGTGGTGGCG
CGCCGCACAGTGGCGAAGTATCGCGAGGCGCTCAAGATTCCAGCGGTCAACCTGCGCAAGTCTCTTTAG

Domains

Predicted by InterproScan.

• Sigma-54, DNA binding domain (Sigma54_DBD) (345-500)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (138-329)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (4-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	68.327	100	0.683