Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   U0042_RS20940 Genome accession   NZ_CP139965
Coordinates   4656253..4657602 (-) Length   449 a.a.
NCBI ID   WP_114809322.1    Uniprot ID   -
Organism   Paraburkholderia kururiensis strain HAMBI 2494     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4651253..4662602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0042_RS20920 (U0042_20925) leuA 4651480..4653168 (-) 1689 WP_114809326.1 2-isopropylmalate synthase -
  U0042_RS20925 (U0042_20930) ybiB 4653523..4654503 (-) 981 WP_114809325.1 DNA-binding protein YbiB -
  U0042_RS20930 (U0042_20935) - 4654770..4655468 (+) 699 WP_114809324.1 fumarylacetoacetate hydrolase family protein -
  U0042_RS20935 (U0042_20940) maiA 4655496..4656140 (+) 645 WP_114809323.1 maleylacetoacetate isomerase -
  U0042_RS20940 (U0042_20945) pilA 4656253..4657602 (-) 1350 WP_114809322.1 signal recognition particle-docking protein FtsY Machinery gene
  U0042_RS20945 (U0042_20950) rsmD 4657826..4658455 (+) 630 WP_114809321.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  U0042_RS20950 (U0042_20955) coaD 4658566..4659075 (+) 510 WP_114809320.1 pantetheine-phosphate adenylyltransferase -
  U0042_RS20955 (U0042_20960) - 4659232..4659489 (+) 258 WP_114809319.1 YfhL family 4Fe-4S dicluster ferredoxin -
  U0042_RS20960 (U0042_20965) hisC 4659521..4660591 (-) 1071 WP_114809318.1 histidinol-phosphate transaminase -
  U0042_RS20965 (U0042_20970) pth 4660611..4661210 (-) 600 WP_017772639.1 aminoacyl-tRNA hydrolase -
  U0042_RS20970 (U0042_20975) - 4661349..4661963 (-) 615 WP_114809317.1 50S ribosomal protein L25/general stress protein Ctc -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 46920.49 Da        Isoelectric Point: 4.9271

>NTDB_id=912051 U0042_RS20940 WP_114809322.1 4656253..4657602(-) (pilA) [Paraburkholderia kururiensis strain HAMBI 2494]
MFSFFKRFRGSKAAEGAPADAQAETPAEVQSEPAQQPAAVAETTPPPLEAAARVTPAAAPAPSAREPEASPPQQRPAADI
PAPSPASAQPAVTPPTVAARPVTTDPAVAPSSAAQAAAPQVAYAPPTGQADDESVETVEIVPPPAPEPEAKKSWLSRLRS
GLSKTSSNIAGIFVATRIDEDLYEELETALLMSDAGVEATEFLLESLREKVRTGRLTDAQQVKTALRGLLVDLLKPLEKS
LVLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQRFNQSVLLAAGDTFRAAAREQLAIWGERNNVTVVSQESGDPAAVIFD
AVGAARARKVDVLMADTAGRLPTQLHLMEELRKVKRVIGKALDGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVT
KLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEEFADALLGA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=912051 U0042_RS20940 WP_114809322.1 4656253..4657602(-) (pilA) [Paraburkholderia kururiensis strain HAMBI 2494]
ATGTTCAGTTTTTTCAAGCGATTCAGAGGATCGAAAGCCGCCGAAGGCGCGCCCGCCGATGCGCAGGCCGAGACTCCGGC
CGAGGTTCAAAGTGAACCAGCGCAGCAGCCGGCCGCCGTCGCGGAAACCACGCCGCCGCCGCTGGAGGCAGCCGCTCGCG
TAACGCCAGCCGCGGCACCGGCGCCATCCGCACGCGAGCCTGAAGCATCACCACCTCAACAGCGACCCGCCGCCGACATC
CCGGCGCCTTCGCCCGCATCCGCGCAACCCGCCGTCACGCCGCCGACGGTCGCGGCAAGGCCGGTCACGACAGATCCAGC
CGTGGCGCCATCGTCCGCAGCTCAAGCCGCTGCACCACAGGTCGCCTACGCTCCCCCAACCGGCCAGGCCGACGACGAAT
CGGTCGAAACAGTCGAAATCGTTCCGCCGCCCGCGCCGGAACCCGAAGCGAAGAAGTCGTGGCTCTCGCGGCTCCGAAGC
GGTCTGTCCAAAACCAGCTCGAACATTGCAGGCATCTTCGTCGCCACCAGGATCGACGAAGACCTGTACGAAGAGCTGGA
AACCGCGCTGCTGATGTCCGACGCAGGCGTTGAAGCCACGGAGTTCCTGCTCGAATCGCTGCGCGAGAAGGTCCGTACGG
GCCGGCTCACCGACGCACAGCAGGTGAAGACTGCGCTGCGGGGCCTGCTGGTCGATCTGCTGAAGCCGCTCGAAAAATCG
CTCGTGCTCGGTCGCGCGCAGCCGCTCGTCATGATGATTGCCGGCGTGAACGGTGCGGGCAAAACCACGAGCATCGGCAA
GCTCGCCAAGCATCTGCAGCGTTTCAATCAGTCGGTGCTGCTCGCGGCCGGCGACACGTTCCGCGCCGCCGCGCGCGAGC
AACTCGCCATCTGGGGCGAGCGCAACAACGTGACGGTGGTGTCGCAGGAAAGCGGTGACCCGGCCGCCGTGATCTTCGAC
GCGGTGGGCGCCGCGCGCGCCCGCAAGGTCGACGTGCTGATGGCCGACACGGCCGGCCGCCTGCCCACCCAGCTTCACCT
CATGGAGGAGTTGCGCAAGGTGAAGCGCGTGATCGGCAAGGCGCTCGACGGCGCACCGCACGAAGTGCTGCTCGTGATCG
ACGCCAACACCGGTCAGAACGCGCTCGCCCAGGTGAAAGCCTTCGACGACGCGCTGGGCCTCACCGGCCTCATCGTCACG
AAGCTCGACGGCACGGCGAAGGGCGGCATTCTCGCCGCGATCGCGCGTCAGCGGCCGGTGCCGGTGTACTTCATCGGTGT
GGGCGAAAAGGTGGAAGATTTGCAGCCGTTCAGTGCCGAGGAGTTCGCCGACGCGCTACTGGGCGCGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(171-227)

SRP54-type protein, GTPase domain (SRP54)

(249-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.763

100

0.519