Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   L6419_RS08280 Genome accession   NZ_AP025332
Coordinates   1747519..1749306 (-) Length   595 a.a.
NCBI ID   WP_237375318.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-184     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1742519..1754306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6419_RS08260 (GUT184_15940) - 1743319..1744221 (-) 903 WP_024531884.1 ABC transporter permease -
  L6419_RS08265 (GUT184_15950) opp4B 1744232..1745188 (-) 957 WP_024531883.1 oligopeptide ABC transporter permease -
  L6419_RS08270 (GUT184_15960) - 1745190..1746167 (-) 978 WP_050579600.1 ATP-binding cassette domain-containing protein -
  L6419_RS08275 (GUT184_15970) - 1746136..1747134 (-) 999 WP_024531881.1 ABC transporter ATP-binding protein -
  L6419_RS08280 (GUT184_15980) oppA 1747519..1749306 (-) 1788 WP_237375318.1 oligopeptide ABC transporter substrate-binding protein Regulator
  L6419_RS08285 (GUT184_15990) pbp3 1749517..1750758 (+) 1242 WP_237375319.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  L6419_RS08290 (GUT184_16000) sufB 1750992..1752407 (-) 1416 WP_120172170.1 Fe-S cluster assembly protein SufB -
  L6419_RS08295 (GUT184_16010) sufU 1752581..1753021 (-) 441 WP_120172171.1 Fe-S cluster assembly sulfur transfer protein SufU -
  L6419_RS08300 (GUT184_16020) - 1753008..1754234 (-) 1227 WP_024531876.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 65865.14 Da        Isoelectric Point: 4.9248

>NTDB_id=91202 L6419_RS08280 WP_237375318.1 1747519..1749306(-) (oppA) [Streptococcus ruminantium strain GUT-184]
MKKTTKLFALAGVTLLSVAALSACGSKKSNTAKQDLSFPSEVKQEGTAVAGAQLKVAWVSATTSTGLLIDELTSNTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKVKISLTGKDYKWSDGQPFTINDYIFTIKAMASKDYTGVRFDDKFLN
IVGMEDFVAGKASDISGIKKIDDYTVELSVKEMSPSMMYAGGKLPSYIQPEHIYKDIPVKDWESSEYSRTAKIVGMGPWK
VKEIVNGESITYVPNEHYFKGAPKTSSLKMDIVSPDTIVSEMKAGNYDIADMPSDQVDSYKNLSNLNVVGRLASNYEYIS
FNFGKYDSNQSKNVMDENAKMNDVKLRQAIAYAIDTKTAGEKLYHGLYHPAKSLIISFFGDLHDSELEGYTYNPEKAKKL
LDEAGYKDVDGDGIREGKDGKPFKISFAARKRTEANEALMQQYLAWWKEVGLNVELYTGRTIEPNSFYDMIEANDANIDM
YAAGWSTGYDPDPTGLWGPIAKFNMSRFVSDENTKLLEAFSSADSFDEKKNLENYKAWQKYAAEQAFAIPTFESETLTAL
NKRVKNYDNKLGSASGNGLAYENIELLADKGEAAK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=91202 L6419_RS08280 WP_237375318.1 1747519..1749306(-) (oppA) [Streptococcus ruminantium strain GUT-184]
ATGAAGAAGACAACGAAACTTTTTGCACTTGCTGGTGTGACTCTCCTCTCAGTAGCGGCTCTTTCAGCATGTGGTTCTAA
GAAATCGAATACTGCAAAGCAAGATTTGTCATTCCCATCTGAAGTAAAACAAGAGGGAACTGCTGTTGCGGGTGCTCAAC
TGAAGGTTGCTTGGGTCTCAGCTACAACTTCAACAGGTCTTTTGATTGACGAATTGACTTCAAATACCACTGACTCAACA
TTCGGTGGCATGGTTGATATTTCAATGTTTGGCTATGATGGTGACCGCAAGTTAGACGATTCAGGTCTTGCTAAGGCTGA
GTTTGATGTAAAAGGGAAAAAAGTAAAGATTAGCTTGACAGGTAAAGACTACAAGTGGTCTGATGGTCAACCGTTTACTA
TCAACGACTATATCTTCACCATCAAGGCAATGGCAAGCAAAGATTACACTGGTGTCCGTTTTGATGATAAATTCTTGAAC
ATCGTTGGTATGGAAGACTTTGTTGCTGGAAAAGCTTCTGACATCTCTGGGATCAAGAAAATTGATGATTACACAGTGGA
ATTGTCTGTGAAGGAAATGTCTCCGTCAATGATGTATGCTGGTGGTAAGTTACCTTCTTACATTCAACCAGAACACATTT
ATAAAGATATTCCAGTCAAAGACTGGGAGAGCAGCGAGTACTCACGTACAGCTAAGATTGTAGGTATGGGTCCTTGGAAG
GTTAAAGAAATCGTTAACGGTGAGTCTATCACATATGTTCCAAATGAGCATTACTTCAAGGGTGCGCCGAAAACAAGCTC
ATTGAAGATGGATATTGTATCACCTGACACAATCGTTTCTGAGATGAAGGCTGGTAACTACGATATTGCAGACATGCCAT
CAGATCAGGTGGATTCATATAAGAACTTGTCTAACCTTAATGTTGTTGGAAGACTTGCTTCAAATTATGAGTATATCTCC
TTTAACTTTGGTAAATACGACAGCAATCAGTCTAAGAACGTGATGGACGAAAATGCTAAGATGAATGATGTGAAGCTTCG
CCAAGCGATTGCTTATGCAATTGATACGAAGACAGCGGGTGAAAAATTGTACCACGGTCTATACCATCCAGCTAAATCAT
TGATTATCTCCTTCTTCGGTGATCTTCATGATTCAGAATTGGAAGGCTACACTTACAATCCAGAAAAAGCTAAGAAACTC
TTGGATGAAGCTGGTTATAAGGATGTAGACGGAGATGGTATCCGCGAAGGTAAAGATGGTAAACCATTCAAGATTTCGTT
CGCAGCTCGTAAGCGTACAGAAGCTAACGAAGCCCTTATGCAGCAGTACCTTGCTTGGTGGAAAGAAGTTGGCTTGAATG
TTGAATTGTACACAGGTCGTACAATTGAACCTAACTCGTTCTACGATATGATTGAAGCAAACGATGCAAATATTGATATG
TATGCTGCTGGTTGGTCAACAGGATATGATCCAGATCCAACAGGTCTTTGGGGACCAATTGCGAAGTTCAACATGTCACG
CTTTGTTTCTGATGAAAATACTAAGTTATTAGAAGCGTTTAGCTCGGCAGACTCATTTGATGAGAAGAAAAACCTTGAAA
ACTACAAGGCATGGCAAAAATATGCTGCTGAGCAAGCATTTGCTATTCCAACATTCGAGTCAGAGACATTGACAGCTCTC
AACAAGCGTGTGAAGAACTATGATAATAAACTTGGTTCAGCGTCAGGCAATGGTCTTGCTTATGAAAATATCGAGCTTCT
TGCAGACAAAGGTGAAGCTGCGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(122-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

84.564

100

0.847

Multiple sequence alignment