Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   L6419_RS08220 Genome accession   NZ_AP025332
Coordinates   1736874..1737608 (-) Length   244 a.a.
NCBI ID   WP_024531892.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-184     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1731874..1742608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6419_RS08190 (GUT184_15800) rnpM 1731957..1732253 (-) 297 WP_024531898.1 RNase P modulator RnpM -
  L6419_RS08195 (GUT184_15810) nusA 1732270..1733412 (-) 1143 WP_237375314.1 transcription termination factor NusA -
  L6419_RS08200 (GUT184_15820) rimP 1733492..1733962 (-) 471 WP_024531896.1 ribosome maturation factor RimP -
  L6419_RS08205 (GUT184_15830) trmB 1734355..1734990 (-) 636 WP_024531895.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  L6419_RS08210 (GUT184_15840) ccrZ 1734987..1735781 (-) 795 WP_024531894.1 cell cycle regulator CcrZ -
  L6419_RS08215 (GUT184_15850) - 1735831..1736877 (-) 1047 WP_237375315.1 ABC transporter permease -
  L6419_RS08220 (GUT184_15860) pptA 1736874..1737608 (-) 735 WP_024531892.1 ABC transporter ATP-binding protein Regulator
  L6419_RS08225 (GUT184_15870) - 1737671..1738084 (+) 414 WP_120172162.1 HIT family protein -
  L6419_RS08230 (GUT184_15880) - 1738086..1738379 (+) 294 WP_024531890.1 hypothetical protein -
  L6419_RS08235 (GUT184_15890) - 1738429..1739625 (-) 1197 WP_024531889.1 LCP family protein -
  L6419_RS08240 (GUT184_15900) - 1739622..1740149 (-) 528 WP_237375316.1 GNAT family N-acetyltransferase -
  L6419_RS08245 (GUT184_15910) tsaE 1740142..1740582 (-) 441 WP_029187388.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  L6419_RS08250 (GUT184_15920) - 1740814..1742478 (-) 1665 WP_237375317.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27177.51 Da        Isoelectric Point: 4.4958

>NTDB_id=91201 L6419_RS08220 WP_024531892.1 1736874..1737608(-) (pptA) [Streptococcus ruminantium strain GUT-184]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQILIDGQSLTQDAEHYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLNWEQAWNRAERLLNIFRLDEKLDWFPVHFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAIADLLAILEEEKAKGTSILMSTHVLDSAEKMCDRFVILHQGQVRAAGNLAELQATFAMEEASLSDIYLALTQE
GVVR

Nucleotide


Download         Length: 735 bp        

>NTDB_id=91201 L6419_RS08220 WP_024531892.1 1736874..1737608(-) (pptA) [Streptococcus ruminantium strain GUT-184]
ATGTTAGAAGTAAAAAATGTCACAGGTGGCTATGTAAATATCCCTGTCTTGAAAGATGTATCTTTTACAGTTGAAGATGG
ACAGTTGGTCGGCTTAATCGGTCTTAATGGTGCTGGAAAATCAACTACCATAAAAGAAATTATCGGCCTTTTGACACCCT
ATCAAGGACAGATTTTGATTGATGGCCAAAGCCTGACACAGGATGCAGAACATTATCGAAAAAAGATTGGTTTTATCCCA
GAAACGCCTAGTTTATACGAGGAGCTAACTCTCAAAGAACATTTGGAAGTTGTTGCTATGGCTTATGATTTGAATTGGGA
GCAGGCTTGGAACCGAGCAGAACGGTTGCTGAATATTTTTCGTCTGGACGAAAAGTTGGATTGGTTCCCTGTTCATTTTT
CAAAAGGAATGAAGCAAAAAGTGATGATTATCTGTGCATTTATGGTAGAACCAAGCCTGTTGATCGTTGACGAGCCTTTT
TTAGGTTTGGATCCGGTAGCTATTGCCGATTTGCTTGCTATCCTAGAGGAAGAAAAAGCAAAGGGAACTTCTATCCTGAT
GTCAACGCATGTCCTAGATTCGGCTGAAAAAATGTGTGATCGGTTTGTTATTCTCCACCAAGGGCAGGTACGAGCAGCTG
GAAATTTGGCTGAGCTACAGGCAACTTTTGCTATGGAAGAGGCCAGTCTCAGTGATATTTATCTTGCCTTGACGCAAGAG
GGAGTGGTCAGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.803

97.951

0.713
  pptA Streptococcus thermophilus LMD-9

71.967

97.951

0.705

Multiple sequence alignment