Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   U0021_RS00310 Genome accession   NZ_CP139961
Coordinates   83771..84712 (-) Length   313 a.a.
NCBI ID   WP_049236033.1    Uniprot ID   -
Organism   Moraxella canis strain HAMBI_2792     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 78771..89712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0021_RS00290 (U0021_00290) purF 79975..81504 (-) 1530 WP_114800528.1 amidophosphoribosyltransferase -
  U0021_RS00295 (U0021_00295) - 81570..82082 (-) 513 WP_114800527.1 CvpA family protein -
  U0021_RS00300 (U0021_00300) - 82087..83112 (-) 1026 WP_114800526.1 quinone-dependent dihydroorotate dehydrogenase -
  U0021_RS00305 (U0021_00305) - 83223..83771 (-) 549 WP_227538702.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  U0021_RS00310 (U0021_00310) pilA 83771..84712 (-) 942 WP_049236033.1 signal recognition particle-docking protein FtsY Machinery gene
  U0021_RS00315 (U0021_00315) - 84840..86963 (-) 2124 WP_114800525.1 PhoX family phosphatase -
  U0021_RS00320 (U0021_00320) - 87357..88751 (+) 1395 WP_114800524.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33678.58 Da        Isoelectric Point: 4.8938

>NTDB_id=912009 U0021_RS00310 WP_049236033.1 83771..84712(-) (pilA) [Moraxella canis strain HAMBI_2792]
MSENEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKEIDDELLEEVEDQLLVADIGVNATNRIIKNLTEQTARGDLIYSH
SLYKALKTELTDILTPKVEPLVIDTTKKPFVILMVGVNGVGKTTTIGKLAKRLQAEGKSVMLAAGDTFRAAATEQLQIWG
ERNGIPVVAQGHGSDSASVIFDAMQSAKAKGIDVLIADTAGRLQNKTYLMNELEKVVRVMKKGDETAPHETMIVLDAGTG
QNAINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPKDFVDALLEKEE

Nucleotide


Download         Length: 942 bp        

>NTDB_id=912009 U0021_RS00310 WP_049236033.1 83771..84712(-) (pilA) [Moraxella canis strain HAMBI_2792]
ATGAGCGAAAACGAAAAAGGCGGCTGGTTTTCCCGCATGAAAGCTGGACTATCAAAGTCAAGCAAAAACTTATCAGAAGG
GCTGGTTAATGTCTTGGTCGGCGGCAAAGAGATTGATGATGAGCTGCTTGAAGAAGTTGAAGATCAGCTACTGGTTGCTG
ATATCGGTGTCAATGCCACCAACCGCATTATCAAAAATCTGACCGAGCAGACCGCGCGCGGCGATTTGATTTATTCGCAT
TCTTTGTATAAGGCGCTCAAAACTGAGCTGACCGATATTTTGACGCCCAAAGTTGAGCCTTTGGTCATTGACACCACCAA
AAAACCTTTCGTCATCTTGATGGTGGGTGTCAATGGCGTTGGTAAGACTACCACGATCGGCAAGCTTGCCAAGCGCCTAC
AAGCCGAAGGTAAATCAGTGATGCTTGCTGCTGGCGACACCTTTCGGGCAGCAGCAACCGAGCAGCTACAAATCTGGGGC
GAGCGAAATGGCATCCCTGTCGTCGCTCAAGGACATGGGTCAGATAGTGCTTCGGTAATTTTTGATGCCATGCAGTCTGC
TAAGGCAAAGGGCATAGACGTGCTCATCGCTGATACAGCAGGGCGCCTACAAAATAAAACCTATCTTATGAATGAGCTTG
AAAAAGTCGTCCGTGTGATGAAAAAAGGCGACGAGACAGCTCCGCACGAGACAATGATCGTGCTAGATGCAGGCACAGGT
CAAAACGCCATTAATCAAGTGCAGGTATTTTCAGAGGCGGTGAATTTGACAGGTATCAGTGTCACCAAGCTTGATGGCAC
TGCCAAAGGCGGCGTGGTATTTAATATTGCCCAAAACACCGACATTCCCATCCGTTTTATCGGCGTTGGGGAAGGTATTG
ATGATCTACAGCCCTTTAAGCCAAAAGATTTTGTCGATGCGCTTTTGGAAAAAGAGGAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(109-309)

SRP54-type protein, helical bundle domain (SRP54_N)

(25-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.074

98.722

0.524