Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   L6419_RS07280 Genome accession   NZ_AP025332
Coordinates   1524894..1526696 (-) Length   600 a.a.
NCBI ID   WP_155964502.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-184     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1519894..1531696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6419_RS07260 (GUT184_13960) - 1521345..1521830 (-) 486 WP_024531729.1 LURP-one-related/scramblase family protein -
  L6419_RS07265 (GUT184_13970) - 1522031..1523029 (-) 999 WP_155962632.1 peptidylprolyl isomerase -
  L6419_RS07270 (GUT184_13980) - 1523091..1523810 (-) 720 WP_156009547.1 O-methyltransferase -
  L6419_RS07275 (GUT184_13990) - 1523888..1524436 (-) 549 WP_155964503.1 DUF6630 family protein -
  L6419_RS07280 (GUT184_14010) pepF 1524894..1526696 (-) 1803 WP_155964502.1 oligoendopeptidase F Regulator
  L6419_RS07285 (GUT184_14020) coiA 1526769..1527707 (-) 939 WP_155962630.1 competence protein CoiA Machinery gene
  L6419_RS07290 (GUT184_14030) metG 1527772..1529775 (-) 2004 WP_155962629.1 methionine--tRNA ligase -
  L6419_RS07295 (GUT184_14040) - 1530027..1530623 (+) 597 WP_024533046.1 DUF1361 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69413.75 Da        Isoelectric Point: 4.7005

>NTDB_id=91193 L6419_RS07280 WP_155964502.1 1524894..1526696(-) (pepF) [Streptococcus ruminantium strain GUT-184]
MSKQRHEIEEKYQWDLTTIFPTDEAWEEEYIALQAETEKTKDFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAISLYSAFSQAFAFYEPEFMAITEEQLTAFKTKEPALIQYNHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADENGNLVPLSHGNYIHFMESKNREVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHAALAANFIPESVYDTLVSAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYAPLSDFSTKISYEDALK
KCQETLEIFGEDYSTIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMFTLIHETGHSLHSMLTRRT
QPYVYGHYTLFLAEIASTTNENLLTEKLLAEVKDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGKMNEKYYGLSAEDNPEIQYEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEELVERGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=91193 L6419_RS07280 WP_155964502.1 1524894..1526696(-) (pepF) [Streptococcus ruminantium strain GUT-184]
ATGTCAAAACAACGTCATGAGATTGAAGAAAAATATCAGTGGGATCTAACCACTATTTTCCCAACCGATGAAGCTTGGGA
GGAAGAATATATTGCCCTACAGGCTGAAACAGAAAAGACCAAAGATTTTGCAGGACATTTGTTGGACTCTGCTAAAAGTC
TTTTAGAGATTAGCGAGACCCAGCTTGGTTTGATGCGCCGTATCGAAAAACTGTATGTTTATGCTTCTATGAAGAACGAC
CAAGATACTCGTGAAGGGAAATACCAAGAATTTCAAGCCAAAGCTATCAGTCTCTATTCTGCTTTTTCACAAGCTTTTGC
CTTTTACGAGCCAGAATTTATGGCGATTACAGAAGAGCAGTTGACAGCTTTCAAGACTAAGGAACCAGCCTTGATTCAAT
ACAATCACCAATTTGAAAAGCTGTTAGCCGCAAAAGATCATGTTCTATCTCAAGAAGTAGAAGAAGTTCTAGCTGCAACC
AGTGAAATTTTTGAATCCCCAGCAGAAACCTTCTCGGTCTTAGATAATGCCAGTTTGCGTTTCCCTGAAATCGCAGATGA
AAATGGCAATCTAGTGCCTCTGTCGCACGGTAATTACATCCATTTTATGGAGTCTAAAAATCGTGAAGTTCGTCAGGAAG
CCTATGAAGCCATGTACGGAACCTATGAGCAGTTCCAGCATACCTATGCAAAGACACTTCAGTCCAATGTTAAGGTCAAT
AACTTGAAAGCTCGTTTGCGTAAGTACGATTCGGCTCGCCACGCAGCACTTGCAGCTAATTTTATTCCAGAATCTGTCTA
TGATACATTGGTATCAGCTGTCAATAAGCACCTGCCTCTCCTGCATCGTTATATCAACTTGCGTAAGAAACTCTTGGGAA
TTGATGACCTCAAGATGTACGATATGTACGCACCCTTGTCCGATTTTAGTACAAAGATTTCTTATGAGGATGCACTCAAA
AAATGTCAAGAAACGTTGGAAATTTTTGGTGAAGACTACTCAACTATTGTTAAAGAAGCCTTTGAAAATCGCTGGATTGA
TGTTCATGTTAACGAAGGAAAGCGTTCAGGAGCTTATTCAGGTGGCGCCTATGATACCAATGCCTTCATGTTGCTCAACT
GGCAGGACAACTTGGATAACATGTTTACTTTGATTCACGAAACAGGTCACTCCCTTCATTCCATGCTGACTCGTAGAACC
CAGCCTTATGTCTATGGACATTACACTCTCTTCTTGGCAGAAATTGCTTCAACTACCAACGAGAACCTCCTCACTGAAAA
GCTCTTGGCAGAAGTGAAGGACGATAAGGAGCGCTTTGCAATCCTCAACCACTATTTGGATGGTTTCCGTGGCACAGTAT
TCCGTCAGACTCAATTTGCTGAGTTTGAACAAGCTATCTATAAAGCCGACCAAGAAGGGCAGGTTTTGACTGCTGACTTC
CTCAATGAGTTGTACGGTAAGATGAATGAGAAATATTATGGACTTTCTGCGGAAGACAATCCTGAAATCCAGTATGAATG
GGCACGCATTCCGCACTTCTATTACAATTTCTATGTTTACCAGTATGCAACAGGCTTTGCAGCGGCATCAGCCCTTGCCA
ATAAGATTGTCAATGGAAGCCCAGAAGACAAGGAAAACTACCTAAACTATCTGAAGGCTGGTAGTTCCGATTATTCTCTA
AATGTTATCGCCAAAGCTGGTGTGGATATGACTAAAGAAGACTACCTAAATGACGCTTTCAAGGTCTTTGAAGCTCGCTT
GGAGGAACTTGAAGAGCTTGTCGAAAGAGGAGTACATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.833

100

0.698

Multiple sequence alignment