Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   U0544_RS07825 Genome accession   NZ_CP139944
Coordinates   1496982..1497386 (+) Length   134 a.a.
NCBI ID   WP_002117268.1    Uniprot ID   A0A009NDU9
Organism   Acinetobacter pittii strain CARB128     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1491982..1502386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS07810 (U0544_07840) relA 1492968..1495274 (+) 2307 WP_002117181.1 RelA/SpoT family protein -
  U0544_RS07815 (U0544_07845) - 1495321..1496094 (-) 774 WP_002117159.1 SDR family oxidoreductase -
  U0544_RS07820 (U0544_07850) mazG 1496207..1497013 (+) 807 WP_002117253.1 nucleoside triphosphate pyrophosphohydrolase -
  U0544_RS07825 (U0544_07855) comEA 1496982..1497386 (+) 405 WP_002117268.1 ComEA family DNA-binding protein Machinery gene
  U0544_RS07830 (U0544_07860) pcnB 1497512..1498975 (+) 1464 WP_002117192.1 polynucleotide adenylyltransferase PcnB -
  U0544_RS07835 (U0544_07865) folK 1498972..1499454 (+) 483 WP_002117282.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  U0544_RS07840 (U0544_07870) panB 1499500..1500309 (+) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  U0544_RS07845 (U0544_07875) panC 1500313..1501161 (+) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  U0544_RS07850 (U0544_07880) rapZ 1501185..1502036 (+) 852 WP_002117179.1 RNase adapter RapZ -
  U0544_RS07855 (U0544_07885) - 1502033..1502302 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15424.68 Da        Isoelectric Point: 10.4871

>NTDB_id=911929 U0544_RS07825 WP_002117268.1 1496982..1497386(+) (comEA) [Acinetobacter pittii strain CARB128]
MQLSMNLWKNKHNIFIVLFWSLISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQQASHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=911929 U0544_RS07825 WP_002117268.1 1496982..1497386(+) (comEA) [Acinetobacter pittii strain CARB128]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAACATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTGAGCATGC
AACAAGCCTCTCATTCTAATAGTCCAAAAAGCTCAGTTATGACTGATTCGTCAGGGCAAATACACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTAGAATACCGTCAAAAGAATGGCGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NDU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

70.073

100

0.716
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

41.935

92.537

0.388