Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   U0544_RS05660 Genome accession   NZ_CP139944
Coordinates   1040524..1041678 (-) Length   384 a.a.
NCBI ID   WP_002114134.1    Uniprot ID   K9CH49
Organism   Acinetobacter pittii strain CARB128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1035524..1046678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS05640 (U0544_05660) - 1036679..1037332 (+) 654 WP_078210243.1 TetR/AcrR family transcriptional regulator -
  U0544_RS05645 (U0544_05665) - 1037436..1038356 (+) 921 WP_002114137.1 DMT family transporter -
  U0544_RS05650 (U0544_05670) yrdC 1038749..1039318 (-) 570 WP_326938898.1 L-threonylcarbamoyladenylate synthase -
  U0544_RS05655 (U0544_05675) dprA 1039370..1040503 (-) 1134 WP_002114040.1 DNA-processing protein DprA Machinery gene
  U0544_RS05660 (U0544_05680) tsaP 1040524..1041678 (-) 1155 WP_002114134.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  U0544_RS05665 (U0544_05685) def 1041801..1042331 (+) 531 WP_002114101.1 peptide deformylase -
  U0544_RS05670 (U0544_05690) - 1042375..1042800 (+) 426 WP_002114087.1 DUF2946 family protein -
  U0544_RS05675 (U0544_05695) oprC 1042873..1044987 (+) 2115 WP_002114079.1 TonB-dependent copper receptor -
  U0544_RS05680 (U0544_05700) - 1045041..1045247 (+) 207 WP_002114054.1 hypothetical protein -
  U0544_RS05685 (U0544_05705) - 1045315..1046529 (-) 1215 WP_002114062.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42614.51 Da        Isoelectric Point: 7.2977

>NTDB_id=911915 U0544_RS05660 WP_002114134.1 1040524..1041678(-) (tsaP) [Acinetobacter pittii strain CARB128]
MKKVFDGMVQFHALGIKKHLLALALFTGVAFSTLAETYAASPNHNPPSLKSNAPHVYVVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNNNVPVIPLEHIKQWLE
HSTILPIDAIQHTPYVVGTADQRVLAAKGQTIYARGQGLIDGQRYAVYREGEPYYFTDSKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVMPEEEATLPTLFYPVDATQVTDGGKIIRVMGSIGTAAKNSVVTLDRGTAQGIQVGQ
VFDITQQGETIRDPKTKEPIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPVKVGSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=911915 U0544_RS05660 WP_002114134.1 1040524..1041678(-) (tsaP) [Acinetobacter pittii strain CARB128]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTGGCACTTTTTAC
AGGGGTTGCATTCAGTACGTTAGCAGAGACTTATGCTGCTAGTCCGAACCATAATCCACCCTCTCTTAAAAGTAATGCGC
CACATGTCTACGTTGTAAAACGAGGAGATACGCTATGGGATATTTCCGGTCACTTTCTGAGTAAACCTTGGCGCTGGCCT
GAAATTTGGGCAAATAATCAGCATGTCAAAAATCCACACTGGATTTATCCTGGTGATCGATTACTGCTGTGTAGTTTAGA
TGGCCGTCCATTGGTTGGAAAAGATGAAGGAGATGGCTGTGTCGGCATTATTCGCCGTTACACAGGCCAAATGACAAATT
TACAACCTCAAGTTCGTGTGGAGTCACTTAACAATAACGTACCTGTTATTCCTCTTGAGCATATCAAACAATGGTTAGAA
CACAGCACTATTCTACCTATCGATGCAATTCAACACACTCCTTATGTAGTCGGTACTGCCGATCAACGTGTACTGGCGGC
CAAAGGTCAGACTATTTATGCGCGCGGACAAGGTTTAATTGATGGTCAACGTTATGCAGTTTATCGTGAAGGCGAACCTT
ATTATTTCACAGACAGTAAAGGTAAAAAGCATAGTCTAGGTATTGAGCTGCAACAAGTTGCCTCAGGGATTGCGATCTCT
TCTGAAAAAGACATTACCACGCTTGAGTTAACTGATAGCTACAATTCTGAAGTACGTCGTGGTGATCGGGTGATGCCAGA
AGAAGAAGCAACCTTACCTACTTTGTTTTATCCGGTGGATGCCACTCAGGTGACGGACGGCGGCAAAATTATTCGTGTAA
TGGGTTCAATTGGTACTGCTGCCAAAAATAGTGTGGTGACTTTAGATCGCGGTACGGCACAAGGTATTCAAGTAGGACAA
GTTTTTGATATTACACAACAAGGTGAAACCATTCGAGATCCTAAAACCAAAGAACCAATACAGTTACCAGGACAACAAAT
TGGTAGTCTGATGGTCTTTAGAACTTTTGATCAGTTGAGTTATGCCTACGTATTAGAAAGCGATTTACCAGTTAAAGTTG
GTTCAAGCATTCAGCCACCCCGCTTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9CH49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

90.104

100

0.901