Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   U0544_RS02080 Genome accession   NZ_CP139944
Coordinates   298153..299037 (-) Length   294 a.a.
NCBI ID   WP_002119545.1    Uniprot ID   -
Organism   Acinetobacter pittii strain CARB128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 293153..304037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS02065 (U0544_02070) miaB 295037..296488 (+) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  U0544_RS02070 (U0544_02075) phoL 296526..297614 (+) 1089 WP_002119513.1 PhoH family protein -
  U0544_RS02075 (U0544_02080) ybeY 297624..298100 (+) 477 WP_002119528.1 rRNA maturation RNase YbeY -
  U0544_RS02080 (U0544_02085) tonB2 298153..299037 (-) 885 WP_002119545.1 energy transducer TonB Machinery gene
  U0544_RS02085 (U0544_02090) - 299270..299941 (+) 672 WP_002119526.1 hypothetical protein -
  U0544_RS02090 (U0544_02095) - 300100..300813 (+) 714 WP_002119525.1 DUF3108 domain-containing protein -
  U0544_RS02095 (U0544_02100) xpt 300886..301461 (+) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  U0544_RS02100 (U0544_02105) wrbA 301513..302115 (-) 603 WP_023187756.1 NAD(P)H:quinone oxidoreductase -
  U0544_RS02105 (U0544_02110) - 302477..303724 (+) 1248 WP_002119535.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33615.18 Da        Isoelectric Point: 7.2531

>NTDB_id=911896 U0544_RS02080 WP_002119545.1 298153..299037(-) (tonB2) [Acinetobacter pittii strain CARB128]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGAGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=911896 U0544_RS02080 WP_002119545.1 298153..299037(-) (tonB2) [Acinetobacter pittii strain CARB128]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCTATGCCTAGCCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCATCAGGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGTGCGGGAGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATCAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGCTTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCCAATATGAAAGATATTTCGGAGTTGCGTATAGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.435

100

0.884