Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   SJH90_RS24120 Genome accession   NZ_CP139937
Coordinates   4998000..4999433 (+) Length   477 a.a.
NCBI ID   WP_043086293.1    Uniprot ID   A0A089PID0
Organism   Pluralibacter gergoviae strain L1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4993000..5004433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH90_RS24090 - 4993555..4994532 (+) 978 WP_048253822.1 calcium/sodium antiporter -
  SJH90_RS24095 kdsD 4994547..4995533 (+) 987 WP_048253823.1 arabinose-5-phosphate isomerase KdsD -
  SJH90_RS24100 kdsC 4995550..4996116 (+) 567 WP_048253824.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  SJH90_RS24105 lptC 4996113..4996685 (+) 573 WP_043080891.1 LPS export ABC transporter periplasmic protein LptC -
  SJH90_RS24110 lptA 4996666..4997220 (+) 555 WP_043080892.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  SJH90_RS24115 lptB 4997227..4997952 (+) 726 WP_043080893.1 LPS export ABC transporter ATP-binding protein -
  SJH90_RS24120 rpoN/rpoN1 4998000..4999433 (+) 1434 WP_043086293.1 RNA polymerase factor sigma-54 Machinery gene
  SJH90_RS24125 hpf 4999456..4999743 (+) 288 WP_043080894.1 ribosome hibernation promoting factor -
  SJH90_RS24130 ptsN 4999801..5000292 (+) 492 WP_043080895.1 PTS IIA-like nitrogen regulatory protein PtsN -
  SJH90_RS24135 rapZ 5000326..5001180 (+) 855 WP_043080896.1 RNase adapter RapZ -
  SJH90_RS24140 npr 5001177..5001449 (+) 273 WP_045288765.1 PTS phosphocarrier protein NPr -
  SJH90_RS24145 yrbL 5001632..5002264 (+) 633 WP_048253826.1 PhoP regulatory network protein YrbL -
  SJH90_RS24150 mtgA 5002266..5002991 (-) 726 WP_048253827.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  SJH90_RS24155 elbB 5002988..5003641 (-) 654 WP_043080900.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53606.41 Da        Isoelectric Point: 4.3084

>NTDB_id=911888 SJH90_RS24120 WP_043086293.1 4998000..4999433(+) (rpoN/rpoN1) [Pluralibacter gergoviae strain L1]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHEEVESPESADTEALDSVDALEQKEMPE
ELPLDASWDEIYTAGTPSGNGVDYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTIPIED
ILESIGDADIDIEEVEAVLKRIQRFDPIGVAAKDLRDCLLIQLSQYASDTPWLAEARSIVSDHLDLLANHDFRSLMRVTR
MREEVLKEAVTLIQSLDPRPGQSIQTGEPEYVIPDVLVRKVSGRWTVELNSDSIPRLQINQHYAGMCNSARSDADSQFIR
SNLQEAKWLIKSLESRNDTLLRVSRCIVEQQQAFFDQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVSTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=911888 SJH90_RS24120 WP_043086293.1 4998000..4999433(+) (rpoN/rpoN1) [Pluralibacter gergoviae strain L1]
ATGAAGCAAGGTTTGCAACTAAGGCTCAGCCAACAGCTCGCCATGACGCCGCAATTGCAGCAGGCTATTCGTCTGCTGCA
GCTCTCTACGCTGGAACTTCAGCAGGAGCTCCAGCAGGCGCTCGAGAGCAATCCCCTGCTTGAGCAAACCGATCTTCACG
AAGAAGTTGAGTCGCCTGAAAGTGCCGATACCGAAGCGCTAGACAGCGTCGATGCGCTTGAGCAGAAAGAGATGCCGGAG
GAGCTGCCTCTTGATGCCAGCTGGGATGAGATATACACCGCTGGCACCCCCTCGGGAAATGGCGTCGATTATCAGGACGA
CGAGCTGCCCGTCTATCAGGGTGAAACCACCCAGTCGCTGCAGGACTATCTGATGTGGCAGGTGGAGCTGACGCCCTTCT
CGGACACCGACCGCGCCATTGCCACCTCCATCGTTGATGCCGTAGACGACACCGGCTACCTCACTATCCCTATCGAAGAT
ATCCTTGAAAGCATCGGCGATGCGGATATCGACATTGAAGAAGTTGAAGCGGTCCTCAAGCGCATCCAGCGCTTCGATCC
GATTGGCGTGGCGGCGAAAGATCTCCGCGACTGCCTGCTGATTCAGCTCTCCCAGTACGCCAGCGATACGCCCTGGCTGG
CGGAAGCCAGAAGTATCGTCAGCGATCATCTGGATCTGCTGGCGAACCACGACTTTCGCAGCCTGATGCGCGTCACCCGC
ATGCGCGAAGAGGTGCTGAAAGAGGCGGTCACGCTTATACAGTCCCTCGACCCGCGTCCGGGACAGTCGATTCAGACCGG
CGAACCGGAGTACGTCATCCCCGACGTGCTGGTGCGCAAGGTGAGCGGCCGCTGGACCGTCGAACTGAACTCCGACAGCA
TTCCGCGCCTGCAGATTAACCAGCACTACGCCGGGATGTGCAATAGCGCGCGCAGCGACGCCGACAGCCAGTTTATCCGC
AGCAATCTGCAGGAAGCGAAGTGGCTGATTAAGAGCCTTGAGAGCCGCAACGATACCCTGCTGCGGGTCAGCCGCTGCAT
CGTCGAGCAACAGCAGGCGTTCTTTGATCAGGGCGAAGAGTTTATGAAGCCGATGGTGCTGGCGGACATCGCCCAGGCCG
TCGAGATGCACGAATCCACGATTTCTCGCGTCACCACGCAGAAATATCTCCACAGCCCGAGGGGCATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTAAGCACCGAGGGCGGCGGCGAAGCCTCCTCGACGGCCATTCGCGCGCTGGTGAAGAAATT
AATTGCCGCGGAAAATCCCGCGAAACCGCTGAGCGACAGTAAGCTGACTACCATGCTGTCCGAGCAGGGTATCATGGTGG
CACGCCGCACCGTTGCAAAGTACCGAGAGTCTTTATCCATTCCGCCGTCAAATCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089PID0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48