Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   L6419_RS01220 Genome accession   NZ_AP025332
Coordinates   232099..232812 (+) Length   237 a.a.
NCBI ID   WP_237375529.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-184     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 227099..237812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6419_RS01210 (GUT184_02090) treC 228118..229749 (-) 1632 WP_155997803.1 alpha,alpha-phosphotrehalase -
  L6419_RS01215 (GUT184_02100) treP 229872..231875 (-) 2004 WP_155971210.1 PTS system trehalose-specific EIIBC component -
  L6419_RS01220 (GUT184_02110) treR 232099..232812 (+) 714 WP_237375529.1 trehalose operon repressor Regulator
  L6419_RS01225 (GUT184_02120) - 232868..233179 (+) 312 WP_024531596.1 hypothetical protein -
  L6419_RS01230 (GUT184_02130) - 233176..233724 (+) 549 WP_237375530.1 CvpA family protein -
  L6419_RS01235 (GUT184_02140) - 233851..236184 (+) 2334 WP_237374249.1 endonuclease MutS2 -
  L6419_RS01240 (GUT184_02150) - 236321..236545 (-) 225 WP_120171267.1 hypothetical protein -
  L6419_RS01245 (GUT184_02160) - 236554..236811 (-) 258 WP_156009915.1 hypothetical protein -
  L6419_RS01250 (GUT184_02170) - 236783..237079 (-) 297 WP_155974302.1 hypothetical protein -
  L6419_RS01255 (GUT184_02180) - 237087..237479 (-) 393 WP_156019711.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27345.30 Da        Isoelectric Point: 8.9094

>NTDB_id=91174 L6419_RS01220 WP_237375529.1 232099..232812(+) (treR) [Streptococcus ruminantium strain GUT-184]
MKKYQEIYNDLKEKIRTNVYPAETSLPTEQELQKIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPISGLT
SYQELADSLQLSTQTKVVHLDMITVDSSLSSLTGFETYSKVWKVIRTRSIDGKVSVVDTDYLSVDVVPKLTVDVAEKSIY
EYLENELGLDIAYAQKEITVEPTNREERRLLKAQDDYLVLIKSRVYLGDTRQFQYTESRHKIDKFRFVDFARRKRTL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=91174 L6419_RS01220 WP_237375529.1 232099..232812(+) (treR) [Streptococcus ruminantium strain GUT-184]
ATGAAAAAGTATCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTACCCAGCGGAAACTTCCTTGCC
TACAGAACAAGAACTTCAGAAAATTTACGGTGTCAGTCGCGATACTGTTCGTAAGGCCTTAGCCATTTTGACAGAGGGTG
GTCTGATTCAAAAGGTTCAGGGACGTGGCTCCATGGTTCTCAAGCAGGAAATTCTTAACTTTCCTATCTCAGGTCTGACT
TCCTATCAGGAATTAGCAGATTCTCTTCAATTATCTACACAGACGAAGGTTGTTCACTTGGATATGATAACGGTTGATTC
TAGCCTTTCCAGCCTGACAGGTTTTGAGACTTACAGTAAGGTATGGAAAGTTATCCGTACACGTTCTATTGATGGAAAAG
TCTCTGTTGTGGATACAGATTATCTTTCTGTAGATGTGGTACCAAAGTTGACGGTGGATGTTGCTGAGAAGTCTATTTAC
GAATATCTGGAAAATGAGCTAGGCCTAGACATAGCATATGCACAAAAGGAAATCACCGTAGAGCCAACCAATCGAGAAGA
ACGCAGATTGTTGAAGGCGCAGGATGACTATTTGGTCTTAATCAAGTCGCGTGTCTATCTCGGTGATACCAGGCAGTTCC
AATACACAGAAAGTAGACACAAGATTGATAAATTCCGCTTTGTGGATTTTGCCCGCAGAAAGCGAACTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.119

99.578

0.519

Multiple sequence alignment