Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABVR74_RS12100 Genome accession   NZ_CP159484
Coordinates   2443396..2444151 (-) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis subsp. lactis strain CBA3648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2438396..2449151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR74_RS12080 (ABVR74_12080) - 2438846..2439826 (+) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -
  ABVR74_RS12085 (ABVR74_12085) - 2439819..2441426 (+) 1608 WP_353891709.1 2-oxo acid dehydrogenase subunit E2 -
  ABVR74_RS12090 (ABVR74_12090) lpdA 2441620..2443038 (+) 1419 WP_017863949.1 dihydrolipoyl dehydrogenase -
  ABVR74_RS12095 (ABVR74_12095) - 2443109..2443282 (-) 174 WP_021214949.1 helix-turn-helix transcriptional regulator -
  ABVR74_RS12100 (ABVR74_12100) recO 2443396..2444151 (-) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  ABVR74_RS12105 (ABVR74_12105) - 2444250..2445425 (-) 1176 WP_033900572.1 pyridoxal phosphate-dependent aminotransferase -
  ABVR74_RS12115 (ABVR74_12115) - 2445890..2446411 (-) 522 WP_003132215.1 N-acetyltransferase -
  ABVR74_RS12120 (ABVR74_12120) - 2446621..2448243 (+) 1623 WP_353891710.1 SulP family inorganic anion transporter -
  ABVR74_RS12125 (ABVR74_12125) - 2448324..2448566 (-) 243 WP_012896919.1 TM2 domain-containing protein -
  ABVR74_RS12130 (ABVR74_12130) - 2448643..2449092 (-) 450 WP_017863945.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=911696 ABVR74_RS12100 WP_003132217.1 2443396..2444151(-) (recO) [Lactococcus lactis subsp. lactis strain CBA3648]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=911696 ABVR74_RS12100 WP_003132217.1 2443396..2444151(-) (recO) [Lactococcus lactis subsp. lactis strain CBA3648]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534