Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   U0320_RS05415 Genome accession   NZ_CP139868
Coordinates   1086558..1087004 (-) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GP11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1081558..1092004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0320_RS05385 (U0320_05380) gcvPA 1082484..1083830 (-) 1347 WP_045177127.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  U0320_RS05390 (U0320_05385) gcvT 1083850..1084941 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  U0320_RS05395 (U0320_05390) - 1085100..1085624 (-) 525 WP_001015121.1 shikimate kinase -
  U0320_RS05400 (U0320_05395) - 1085614..1085760 (-) 147 WP_001789879.1 hypothetical protein -
  U0320_RS05405 (U0320_05400) comGF 1085857..1086354 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  U0320_RS05410 (U0320_05405) comGE 1086272..1086571 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  U0320_RS05415 (U0320_05410) comGD 1086558..1087004 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  U0320_RS05420 (U0320_05415) comGC 1086982..1087293 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  U0320_RS05425 (U0320_05420) comGB 1087307..1088377 (-) 1071 WP_045176802.1 competence type IV pilus assembly protein ComGB Machinery gene
  U0320_RS05430 (U0320_05425) comGA 1088349..1089323 (-) 975 WP_000697227.1 competence type IV pilus ATPase ComGA Machinery gene
  U0320_RS05435 (U0320_05430) - 1089375..1089999 (-) 625 Protein_1049 MBL fold metallo-hydrolase -
  U0320_RS05440 (U0320_05435) - 1089996..1090325 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  U0320_RS05445 (U0320_05440) - 1090325..1091311 (-) 987 WP_000161314.1 ROK family glucokinase -
  U0320_RS05450 (U0320_05445) - 1091308..1091511 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=911624 U0320_RS05415 WP_001790850.1 1086558..1087004(-) (comGD) [Staphylococcus aureus strain GP11]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=911624 U0320_RS05415 WP_001790850.1 1086558..1087004(-) (comGD) [Staphylococcus aureus strain GP11]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993