Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ABVR75_RS06110 Genome accession   NZ_CP159464
Coordinates   1186531..1188270 (-) Length   579 a.a.
NCBI ID   WP_094365742.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain CBA3649     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181531..1193270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR75_RS06090 (ABVR75_06090) pdhA 1181552..1182661 (-) 1110 WP_016265227.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  ABVR75_RS06095 (ABVR75_06095) - 1182985..1183668 (-) 684 WP_016265228.1 hypothetical protein -
  ABVR75_RS06100 (ABVR75_06100) def 1184175..1184732 (+) 558 WP_011374787.1 peptide deformylase -
  ABVR75_RS06105 (ABVR75_06105) rcrQ 1184781..1186544 (-) 1764 WP_016265229.1 ABC transporter ATP-binding protein Regulator
  ABVR75_RS06110 (ABVR75_06110) rcrP 1186531..1188270 (-) 1740 WP_094365742.1 ABC transporter ATP-binding protein Regulator
  ABVR75_RS06115 (ABVR75_06115) - 1188298..1188783 (-) 486 WP_016265231.1 hypothetical protein -
  ABVR75_RS06120 (ABVR75_06120) - 1188980..1189192 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  ABVR75_RS06125 (ABVR75_06125) - 1189197..1190885 (+) 1689 WP_016265232.1 ribonuclease J -
  ABVR75_RS06130 (ABVR75_06130) - 1191018..1191983 (+) 966 WP_016265233.1 diacylglycerol kinase family protein -
  ABVR75_RS06135 (ABVR75_06135) thiW 1192033..1192539 (-) 507 WP_025015722.1 energy coupling factor transporter S component ThiW -
  ABVR75_RS06140 (ABVR75_06140) tenA 1192529..1193215 (-) 687 WP_016265235.1 thiaminase II -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64683.15 Da        Isoelectric Point: 9.1434

>NTDB_id=911571 ABVR75_RS06110 WP_094365742.1 1186531..1188270(-) (rcrP) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MKLMWRYTIRYKKLLFWNFICVFGFILIELGLPTLLGQIIDKGINRHTVGPVWQYGTLMVVISLIGLVGLIGLAYTGSRL
TTNLTRDIRNDIFKKTMQFSHHEYGEFGVSSLITRTTNDAFQVTQFMVQVLRTGFMTPMMIVASAFMIVRTSLSLSWIVF
SAIPILLVGVVIIGWLSEPMSAEQQKNLDAINLNLRENLTGIRVIRAFVREKFQSMRFRKVNEAYSQSSIKLFTLVALAQ
PGFSFIFNIVFVLIIWQGAVQINTGHLAVGTLIAFIEYIFHVLFSFMLFASVFMMYPRAAVSAERIEKVLNSPVDITDDD
QGIQTTTTQGELAFENVSFAYPGPTESPVIRDVSFKAHPGETVAFIGSTGSGKSTLIQLIPRFFDVTRGQVMIDGYDVRD
YQLKALRQKIGFIPQKAVLFTGTIADNLRYGNPEATDAELWDALTIAQSKTFVAEKPDGLQTYLAEGGNNLSGGQKQRLA
IARAIVRRPDIYVFDDSFSALDYQTDAALRGALKSITKEATVLIVAQRVGTIMNADRIVVLNEGQVVGIGTHKELLKTNE
VYRAIAASQLSKEELNEEY

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=911571 ABVR75_RS06110 WP_094365742.1 1186531..1188270(-) (rcrP) [Latilactobacillus sakei subsp. sakei strain CBA3649]
ATGAAATTAATGTGGCGCTATACCATTCGCTATAAAAAACTGTTATTTTGGAATTTTATCTGCGTATTTGGGTTTATTTT
AATTGAACTGGGATTACCAACATTATTAGGACAAATTATCGATAAAGGTATCAACCGCCATACGGTCGGGCCGGTTTGGC
AATATGGGACTTTAATGGTCGTCATTTCCCTGATTGGCCTAGTGGGTTTGATCGGCTTAGCCTACACGGGGAGTCGCTTA
ACCACTAATTTAACGCGTGATATCCGGAACGATATCTTTAAAAAAACGATGCAATTTTCACATCATGAATATGGTGAGTT
TGGCGTGTCTTCCTTAATTACTCGGACGACCAACGATGCGTTTCAAGTGACGCAATTCATGGTGCAAGTGTTACGAACGG
GTTTTATGACCCCGATGATGATCGTTGCCAGTGCGTTCATGATTGTGCGGACGAGTCTGTCATTATCATGGATTGTTTTT
TCAGCCATTCCGATTTTATTAGTTGGGGTGGTTATCATTGGTTGGTTATCCGAACCAATGTCTGCAGAACAACAAAAAAA
CTTAGATGCAATCAATTTAAACTTACGTGAAAATTTAACTGGGATTCGGGTTATTCGCGCATTTGTGCGTGAAAAATTCC
AGAGTATGCGTTTTAGAAAAGTTAATGAAGCCTACAGTCAGAGTTCAATCAAACTCTTTACATTAGTAGCCCTCGCACAA
CCTGGCTTTTCATTTATCTTCAATATTGTGTTCGTGTTAATCATTTGGCAAGGGGCGGTTCAAATTAATACCGGTCACTT
AGCAGTGGGGACGTTAATCGCCTTTATTGAATACATTTTCCATGTACTATTTTCATTCATGCTCTTTGCGAGTGTCTTCA
TGATGTACCCTAGAGCGGCTGTTTCAGCTGAACGGATTGAAAAAGTCCTTAATTCACCCGTAGATATTACGGATGATGAT
CAGGGGATTCAAACTACGACTACCCAAGGCGAATTGGCTTTTGAAAATGTGTCGTTTGCTTATCCTGGTCCGACAGAAAG
TCCGGTCATTCGGGATGTCAGTTTTAAAGCCCATCCTGGTGAAACTGTCGCCTTCATCGGTAGTACAGGGAGTGGTAAAT
CAACCTTAATTCAGTTGATTCCACGCTTTTTCGATGTGACGCGGGGGCAAGTGATGATTGATGGTTACGATGTTCGTGAT
TACCAATTGAAAGCATTACGCCAAAAAATTGGTTTTATTCCCCAAAAGGCGGTCCTCTTTACCGGCACGATTGCGGATAA
CTTGCGCTATGGTAATCCGGAAGCGACGGATGCTGAGTTATGGGATGCTTTAACGATTGCTCAATCCAAAACATTCGTGG
CGGAAAAACCAGACGGTCTCCAAACTTATTTGGCTGAAGGTGGTAACAACTTATCAGGTGGTCAAAAGCAACGACTAGCG
ATTGCCAGAGCAATTGTTCGTCGCCCAGACATCTACGTCTTTGACGATAGCTTTTCAGCCTTGGATTACCAAACAGACGC
AGCATTACGAGGCGCTTTAAAATCGATTACGAAAGAGGCAACCGTCTTAATTGTCGCCCAACGTGTGGGGACGATTATGA
ATGCAGATCGGATTGTCGTCTTAAATGAAGGACAAGTTGTGGGCATCGGTACCCACAAAGAATTACTTAAAACAAATGAG
GTTTACCGGGCCATTGCCGCCTCACAGTTGTCAAAGGAGGAGCTCAATGAAGAATATTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-283)

ABC transporter (ABC_tran)

(351-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.816

100

0.415