Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABVR75_RS03975 Genome accession   NZ_CP159464
Coordinates   757827..759530 (+) Length   567 a.a.
NCBI ID   WP_101377783.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain CBA3649     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 752827..764530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR75_RS03945 (ABVR75_03945) folD 753106..753960 (+) 855 WP_162101015.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  ABVR75_RS03950 (ABVR75_03950) xseA 753953..755302 (+) 1350 WP_056936393.1 exodeoxyribonuclease VII large subunit -
  ABVR75_RS03955 (ABVR75_03955) - 755304..755534 (+) 231 WP_011374387.1 exodeoxyribonuclease VII small subunit -
  ABVR75_RS03960 (ABVR75_03960) - 755534..756406 (+) 873 WP_025015874.1 polyprenyl synthetase family protein -
  ABVR75_RS03965 (ABVR75_03965) - 756415..757245 (+) 831 WP_025015873.1 TlyA family RNA methyltransferase -
  ABVR75_RS03970 (ABVR75_03970) argR 757325..757777 (+) 453 WP_025015872.1 arginine repressor -
  ABVR75_RS03975 (ABVR75_03975) recN 757827..759530 (+) 1704 WP_101377783.1 DNA repair protein RecN Machinery gene
  ABVR75_RS03980 (ABVR75_03980) - 759589..759912 (-) 324 WP_016264858.1 hypothetical protein -
  ABVR75_RS03985 (ABVR75_03985) - 760032..760259 (+) 228 WP_197704094.1 YdbC family protein -
  ABVR75_RS03990 (ABVR75_03990) gmk 760332..760943 (+) 612 WP_011374394.1 guanylate kinase -
  ABVR75_RS03995 (ABVR75_03995) rpoZ 760948..761205 (+) 258 WP_011374395.1 DNA-directed RNA polymerase subunit omega -
  ABVR75_RS04000 (ABVR75_04000) coaBC 761294..762511 (+) 1218 WP_016264860.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63222.20 Da        Isoelectric Point: 4.7021

>NTDB_id=911546 ABVR75_RS03975 WP_101377783.1 757827..759530(+) (recN) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MLQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGRGSQDFIRTGAKKATLEGLFTLPENGTTAALL
AEYGIEHDDQTILLQRDLALNGHNVCRVNGHLVNTTTLKKIGETLVDIHGQNEHQELMYPDRHLGLLDEFAHTTLASAKA
AYQETYQAYRQTEKALKKKQQNEQEWAQRLDMLKFQTNEIDAAQLQPDEESKLIEERAKLSNFQRINQALQASRAILSGE
EGNALDQIAIAMNQMQEIAELDPEFKRIADNLQTGYYTLQDSGSDISREVDNLEWDEARLDEIEQRLETINNLEHKYGDS
IPEILAYGAQITKELQAMQATEANASELEQQFEQQQAQLLEEAAVLSEKRQAAAQQLEKAVHQQLKALYMAKTVFKVEFA
TVDNQQFMRSGRDKVEFYIQPNPGEKLRPLAKTASGGELSRLMLALKTIFSESQGVTSIIFDEVDTGVSGRVAQAIANKI
SEIAQHSQVLCITHLPQVAAMSDHQYQIQKQIKQNRTETSIQKVTGKKRVAELARMLAGTEVTELTLEHAQELVDLAETA
KAQIRQA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=911546 ABVR75_RS03975 WP_101377783.1 757827..759530(+) (recN) [Latilactobacillus sakei subsp. sakei strain CBA3649]
ATGCTACAAGAATTAGTCATTCACGACTTTGCAATTATAGATCAATTGGCCATTAGTTTCGATGAAGGGATGACGGTTCT
TTCTGGTGAAACTGGGGCCGGGAAATCGATTATTATCGACGCGGTTGGCCTACTCGCTGGTGGTCGGGGGTCACAGGATT
TCATCCGAACCGGTGCGAAAAAAGCGACGTTAGAGGGCTTGTTCACATTACCCGAAAACGGCACGACTGCCGCGCTTTTA
GCTGAATATGGGATTGAACACGATGATCAAACCATTTTATTACAACGTGATTTGGCATTAAACGGGCATAATGTTTGCCG
CGTTAATGGGCATCTGGTCAATACCACGACGCTTAAAAAGATTGGAGAAACATTAGTTGATATTCACGGTCAAAACGAAC
ATCAAGAATTAATGTATCCTGATCGCCATCTAGGCTTGTTGGATGAGTTTGCCCACACAACCTTGGCGAGTGCTAAGGCG
GCCTATCAAGAAACCTATCAGGCTTACCGGCAAACGGAAAAAGCATTGAAGAAAAAGCAACAAAATGAGCAGGAATGGGC
CCAACGCCTTGATATGCTTAAATTTCAAACTAATGAAATTGACGCAGCGCAATTACAACCAGATGAAGAAAGTAAGTTAA
TCGAAGAACGCGCGAAACTCAGCAACTTCCAACGGATTAATCAGGCCTTGCAAGCTAGTCGCGCCATTTTATCTGGTGAG
GAAGGCAACGCGCTAGATCAAATCGCGATTGCAATGAATCAAATGCAAGAAATTGCGGAATTAGATCCTGAATTCAAAAG
AATTGCTGATAATCTACAAACAGGCTATTACACACTGCAAGATAGCGGTAGTGATATTAGTCGGGAAGTCGATAATCTTG
AATGGGACGAAGCACGCTTGGATGAAATTGAACAGCGCTTAGAAACAATCAATAATCTCGAACATAAATATGGCGATTCA
ATTCCTGAAATTTTGGCTTATGGGGCGCAAATTACCAAAGAATTGCAAGCAATGCAGGCCACCGAAGCCAATGCAAGCGA
ATTAGAGCAACAATTTGAACAACAACAAGCCCAATTGCTGGAAGAAGCAGCCGTTCTTTCTGAGAAACGCCAAGCAGCTG
CTCAACAGTTGGAAAAGGCTGTTCACCAACAACTCAAAGCGCTCTACATGGCTAAAACGGTTTTCAAAGTTGAATTTGCC
ACGGTTGATAATCAGCAATTTATGCGCAGCGGTCGGGACAAAGTTGAATTTTATATTCAACCTAATCCGGGTGAGAAGCT
ACGGCCGCTTGCCAAGACTGCTTCTGGTGGGGAATTATCCCGATTGATGTTGGCGCTTAAAACGATTTTCTCAGAATCAC
AAGGCGTTACCAGCATTATTTTTGATGAAGTTGATACTGGGGTCAGTGGGCGTGTTGCGCAAGCAATTGCCAATAAAATT
AGCGAAATTGCCCAACACTCACAAGTCCTCTGTATTACGCATTTGCCACAAGTAGCGGCGATGAGTGATCATCAATACCA
AATTCAAAAACAAATTAAACAAAACCGCACAGAAACATCAATCCAAAAGGTAACCGGTAAAAAACGCGTTGCTGAACTGG
CTCGTATGTTGGCGGGGACAGAAGTGACGGAATTAACGCTAGAACACGCCCAAGAATTAGTGGACCTCGCAGAAACTGCT
AAAGCACAGATTAGACAAGCTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.819

100

0.464