Detailed information NTG0911526

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: ABVR75_RS01110
• Genome accession: NZ_CP159464
• Coordinates: 223174..225297 (+)
• Length: 707 a.a.
• NCBI ID: WP_016264495.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei subsp. sakei strain CBA3649
• Function: repress competence development (at the early growth phase) (predicted from homology) Competence regulation

Genomic Context

Location: 218174..230297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVR75_RS01100 (ABVR75_01100)	-	219713..220198 (-)	486	WP_016264493.1	TetR/AcrR family transcriptional regulator	-
ABVR75_RS01105 (ABVR75_01105)	-	220305..222893 (+)	2589	WP_353891421.1	hydrophobe/amphiphile efflux-3 (HAE3) family transporter	-
ABVR75_RS01110 (ABVR75_01110)	clpE	223174..225297 (+)	2124	WP_016264495.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
ABVR75_RS01115 (ABVR75_01115)	-	225332..225868 (+)	537	WP_056948692.1	DUF308 domain-containing protein	-
ABVR75_RS01120 (ABVR75_01120)	-	225974..226444 (-)	471	Protein_222	IS30 family transposase	-
ABVR75_RS01125 (ABVR75_01125)	-	226670..227257 (+)	588	WP_099770436.1	recombinase family protein	-
ABVR75_RS01130 (ABVR75_01130)	asnB	228011..229600 (+)	1590	WP_100970100.1	asparagine synthase B	-
ABVR75_RS01135 (ABVR75_01135)	-	229993..230211 (-)	219	WP_099770434.1	putative holin-like toxin	-

Sequence

Protein

• Length: 707 a.a.
• Molecular weight: 78445.88 Da
• Isoelectric Point: 4.7412

>NTDB_id=911526 ABVR75_RS01110 WP_016264495.1 223174..225297(+) (clpE) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MANMYGNDPFFNNDMDDIFNQVFRRMGNSESARYVINGRELSPDEFAQYRATGKLPNREKEIEIKQNGEHALKKGGILEK
LGRNLTQEARDGLLDPVIGRYNEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQEIVAGKVPETIKDKEIYSIDLS
SLEAGTQYRGSFEENIKNLIKEVKAAGNVILFFDEIHQILGIGSTGGEDGGKGLADIIKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNDVLVNEPSAADTVKILQGIKGLYEKHHHIELPDDVLKAAVDYSVQYIPQRTLPDKAIDLLDMTAAHL
AAKRPETDKAKLAAELKQLEADKAEAVEAENYQAAEDLKVRIEKIKTQLENNDQHAAVMIATVDDIAQSVERLTGIPVAK
MGSNDIQRLKNLGQRLKDKVIGQDEAVEMVARAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNKEAII
RLDMSEYADRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLFDEIEKADPQVLTLLLQVMDDGRLTDGQGNVIDF
KNTVIIATSNAGFGNEKLTMNDQEDAKLLDKLAPYFRPEFLNRFNGIVEFTHLTKADLSQIVDLMLTNVEQTLAKKELTL
VVSKEAKDWLMEEGYDEAMGARPLRRVIEQQIRDKVTDFYLDHADVKDLKADLVDDQIVIQAVDSEN

Nucleotide

• Length: 2124 bp

>NTDB_id=911526 ABVR75_RS01110 WP_016264495.1 223174..225297(+) (clpE) [Latilactobacillus sakei subsp. sakei strain CBA3649]
ATGGCAAATATGTACGGAAATGACCCATTTTTTAATAATGATATGGATGATATCTTCAATCAAGTTTTTAGAAGAATGGG
GAATTCAGAGTCAGCGCGATATGTGATTAACGGACGAGAATTATCACCGGATGAGTTTGCTCAGTATCGGGCAACTGGTA
AATTACCTAATCGAGAAAAAGAAATTGAAATTAAACAAAACGGTGAACATGCCCTTAAAAAAGGTGGTATTCTTGAAAAA
TTAGGTCGGAACTTAACACAGGAAGCACGGGATGGTTTATTAGATCCTGTCATCGGCCGGTATAATGAAATCCAAGAAAC
AGCCGAAATATTAAGTCGTCGGACTAAAAATAATCCAATTCTAGTTGGTGATGCAGGTGTTGGGAAGACTGCAGTGGTTG
AAGGATTAGCACAAGAAATTGTGGCTGGAAAAGTGCCTGAAACCATTAAAGATAAAGAAATCTACTCAATCGATTTGTCA
TCTCTAGAAGCCGGGACACAATATCGGGGCTCATTTGAAGAAAATATTAAAAATTTAATTAAAGAAGTAAAAGCAGCCGG
GAACGTCATTCTCTTTTTCGATGAAATTCATCAGATTTTAGGGATTGGTTCAACTGGTGGTGAAGATGGCGGCAAAGGGT
TAGCTGATATTATCAAGCCAGCTTTATCACGTGGTGAATTGACGGTCATCGGTGCGACAACGCAAGATGAATACCGCAAT
ACTATTTTGAAAAATGCCGCGTTAGCAAGACGGTTTAACGATGTGCTGGTGAATGAACCTAGCGCAGCAGATACGGTTAA
AATCTTGCAAGGGATTAAAGGTTTGTACGAAAAACACCATCACATTGAACTACCAGATGATGTTTTGAAAGCGGCTGTTG
ACTATTCTGTTCAATATATTCCACAACGGACGTTGCCAGATAAGGCAATCGATTTATTAGATATGACCGCCGCTCATTTA
GCAGCTAAACGGCCAGAAACAGATAAAGCTAAATTGGCAGCTGAACTTAAACAGTTAGAAGCGGATAAAGCCGAAGCTGT
CGAGGCGGAGAATTATCAAGCTGCTGAAGATTTAAAAGTAAGGATTGAGAAGATTAAGACGCAATTAGAAAATAATGATC
AGCATGCGGCCGTAATGATTGCGACTGTTGATGATATTGCGCAATCTGTTGAAAGATTAACTGGGATTCCAGTTGCTAAA
ATGGGGAGCAATGATATTCAACGCTTGAAGAACTTAGGTCAACGGTTAAAAGACAAGGTCATTGGTCAAGATGAAGCTGT
TGAAATGGTAGCACGCGCAATTCGCAGAAATCGGGCAGGTTTTTCTGAAGGTAACCAACCAATTGGCAGTTTCTTATTTG
TTGGTCCAACTGGGGTCGGGAAAACTGAATTAGCAAAACAATTAGCCTTAGATATGTTTGGTAATAAAGAAGCGATTATC
CGTTTGGATATGAGTGAATATGCTGACCGGACAGCCGTTTCTAAATTGATAGGGACGACAGCCGGCTATGTTGGCTATGA
CGATAATTCCAATACCTTAACCGAACGCGTTCGTCGTAACCCATATTCAATTGTCTTGTTTGATGAAATTGAAAAAGCTG
ATCCACAAGTTTTAACATTATTACTACAAGTGATGGACGATGGTCGCTTAACGGATGGTCAAGGGAACGTGATCGACTTT
AAGAACACGGTGATTATCGCGACATCTAATGCCGGTTTTGGTAATGAAAAATTAACCATGAACGACCAAGAAGATGCTAA
GTTATTAGATAAGTTAGCACCATACTTCAGACCAGAATTCTTAAACCGGTTTAACGGGATTGTTGAATTTACGCATTTAA
CGAAAGCTGACTTGTCACAAATTGTGGATTTAATGTTAACCAACGTTGAACAAACATTAGCTAAAAAAGAATTAACCTTA
GTTGTTTCAAAAGAAGCTAAGGATTGGTTGATGGAAGAAGGCTACGATGAGGCAATGGGGGCTCGTCCATTAAGACGGGT
TATTGAACAACAAATCAGAGATAAGGTCACTGATTTTTACCTCGATCATGCAGATGTCAAAGACTTAAAGGCAGATTTAG
TTGATGATCAGATTGTCATTCAAGCGGTCGACTCTGAAAACTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

• AAA lid domain (AAA_lid_9) (262-359)

• AAA domain (Cdc48 subfamily) (AAA_2) (446-605)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (613-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus mutans UA159	49.214	89.958	0.443
clpC	Lactococcus lactis subsp. cremoris KW2	48.889	89.109	0.436
clpE	Streptococcus pneumoniae Rx1	47.504	87.836	0.417
clpE	Streptococcus pneumoniae D39	47.504	87.836	0.417
clpE	Streptococcus pneumoniae R6	47.504	87.836	0.417
clpE	Streptococcus pneumoniae TIGR4	47.343	87.836	0.416
clpC	Streptococcus pneumoniae Rx1	43.862	94.484	0.414
clpC	Streptococcus pneumoniae D39	43.862	94.484	0.414
clpC	Streptococcus pneumoniae TIGR4	44.154	91.938	0.406
clpC	Bacillus subtilis subsp. subtilis str. 168	45.032	88.26	0.397
clpC	Streptococcus thermophilus LMD-9	44.75	87.553	0.392
clpC	Streptococcus thermophilus LMG 18311	44.013	87.412	0.385
clpC	Streptococcus mutans UA159	43.851	87.412	0.383
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.64	87.977	0.366