Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   ABVR75_RS00610 Genome accession   NZ_CP159464
Coordinates   120602..122893 (+) Length   763 a.a.
NCBI ID   WP_011373848.1    Uniprot ID   Q38ZE3
Organism   Latilactobacillus sakei subsp. sakei strain CBA3649     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 115602..127893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR75_RS00585 (ABVR75_00585) - 115856..116314 (+) 459 WP_011373843.1 MarR family transcriptional regulator -
  ABVR75_RS00590 (ABVR75_00590) - 116806..117708 (-) 903 WP_011373844.1 proline-specific peptidase family protein -
  ABVR75_RS00595 (ABVR75_00595) - 117782..119620 (-) 1839 WP_016264408.1 cation:proton antiporter family protein -
  ABVR75_RS00600 (ABVR75_00600) crcB 119757..120164 (+) 408 WP_035146059.1 fluoride efflux transporter CrcB -
  ABVR75_RS00605 (ABVR75_00605) - 120161..120508 (+) 348 WP_056948605.1 CrcB family protein -
  ABVR75_RS00610 (ABVR75_00610) helD 120602..122893 (+) 2292 WP_011373848.1 RNA polymerase recycling motor HelD Machinery gene
  ABVR75_RS00615 (ABVR75_00615) coaA 123001..123930 (+) 930 WP_016264412.1 type I pantothenate kinase -
  ABVR75_RS00620 (ABVR75_00620) guaA 124097..125650 (+) 1554 WP_016264413.1 glutamine-hydrolyzing GMP synthase -
  ABVR75_RS00625 (ABVR75_00625) - 125810..127051 (+) 1242 WP_353891396.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 87744.69 Da        Isoelectric Point: 6.2654

>NTDB_id=911522 ABVR75_RS00610 WP_011373848.1 120602..122893(+) (helD) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MTDVQKSLEQSRLTEIIGLIKKAETHFEGAVKRAKSEEKEINENFFNDVRLNFNNDSAMTETAVSIEQQRQMLQERNHSW
QQSSRQLETLQKMEKTPYFARVDFQEKGEPKSESIYIGLGSFTDTDDHFLIYDWRAPISSIYYEGKTGAVTYQTPDGPQD
VNISLKRQFLIEDGQIKALFDTQETIGDQMLLEVLGEKSDTQMKSIVTTIQREQNQIIRNTDADLLFVQGAAGSGKTSAI
LQRIAFLLYRYRGNLDSSQVIMFSPNQLFNDYIADVLPELGEQNMIQMTYFQYVARRLPNMAVQSLFDQFETPVNETDGR
ISRLKESLVFYKAVKKYAAHLEKADMRFRDMKVKGRVLITKEHISEVYYRFNENYHLGNRLDATKESLLRTLSHKVDHET
KADWVTEQAENMSDEEIRELMSGKDFKTGDAESKFIAKQIVLEAFKPVRRSIQRNRFLSIQAQYIHFLRVVPQLVKLADF
DITEEQWQDHVTHFVAQLKAKQMTLQDVTPYLHLYDLMTGKKGERDMRFVFIDEIQDYTPYELAFLKLHFPKARFTLLGD
LNQAIFTKGNSTNLLQQVQQLFDAQNTKVVQLTRSYRSTQQVTDFTKGLLKGGQAIEAFNRVGDKPNLIVRQSEAELVAD
VNRQLAANEADELSTAIITKTLVQAQELTKMLKETGTKVTLIRSENQRLAAGTLVVPSFLAKGLEFDAIIGWQISAANYN
HEDQRQLLYTICSRAMHRLTLLATDALSPLIDNVDPEKYTLTK

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=911522 ABVR75_RS00610 WP_011373848.1 120602..122893(+) (helD) [Latilactobacillus sakei subsp. sakei strain CBA3649]
TTGACTGACGTACAGAAATCATTGGAACAAAGCCGATTAACAGAAATTATTGGTTTAATTAAAAAAGCTGAGACCCATTT
TGAAGGGGCTGTTAAGCGCGCAAAATCGGAAGAAAAAGAAATTAACGAGAACTTCTTCAACGACGTTCGCCTTAACTTCA
ATAACGATTCCGCGATGACTGAAACCGCCGTTTCGATTGAACAGCAGCGGCAAATGCTACAAGAACGCAATCACTCGTGG
CAACAATCTTCACGGCAATTGGAAACCTTGCAAAAGATGGAAAAGACGCCATACTTTGCCCGTGTTGATTTTCAAGAAAA
GGGTGAACCTAAATCCGAATCAATTTATATCGGGTTAGGCTCATTTACAGATACCGACGATCATTTCTTAATTTATGATT
GGCGGGCACCAATTTCATCAATTTACTATGAAGGTAAGACGGGCGCTGTGACGTACCAAACACCAGACGGTCCGCAAGAT
GTGAATATCTCACTTAAGCGTCAATTTTTGATTGAAGATGGCCAAATTAAGGCCTTATTTGATACGCAAGAAACGATTGG
CGATCAAATGTTATTAGAAGTGTTAGGTGAAAAATCTGATACACAGATGAAGAGTATCGTGACGACGATTCAACGTGAAC
AAAATCAGATTATCCGTAATACCGATGCTGATTTGTTATTCGTTCAAGGGGCAGCTGGCTCAGGGAAAACGTCAGCTATC
TTGCAACGCATTGCGTTTTTGCTCTATCGCTATCGGGGGAATTTAGATTCGAGCCAAGTGATCATGTTCTCGCCTAACCA
ATTATTCAACGACTACATCGCAGATGTGTTGCCTGAATTGGGCGAACAAAATATGATTCAAATGACTTACTTCCAATATG
TGGCACGCCGGTTACCAAACATGGCGGTCCAGAGCCTCTTTGATCAATTCGAAACACCAGTTAACGAAACCGATGGCCGG
ATTAGTCGCTTGAAAGAAAGTCTCGTCTTTTATAAGGCCGTTAAAAAATACGCTGCACATCTTGAAAAAGCCGACATGCG
CTTCCGCGATATGAAGGTCAAGGGCCGCGTCTTAATTACTAAGGAACACATCAGCGAGGTTTATTACCGGTTTAATGAAA
ACTACCATCTCGGCAATCGATTAGATGCCACTAAAGAAAGTTTGTTGCGGACATTGAGCCACAAGGTTGATCACGAAACC
AAGGCCGACTGGGTGACTGAACAAGCCGAGAATATGAGTGATGAAGAAATTCGCGAATTGATGTCTGGTAAAGATTTCAA
GACGGGCGATGCTGAAAGCAAGTTTATTGCTAAGCAGATCGTGCTAGAAGCGTTCAAACCCGTTCGCCGGTCTATTCAAC
GCAATCGCTTCTTAAGCATCCAGGCGCAATATATTCACTTCTTACGGGTTGTGCCACAACTTGTGAAGTTAGCCGATTTT
GATATTACAGAAGAGCAATGGCAAGACCACGTCACGCATTTTGTCGCACAATTGAAGGCTAAGCAGATGACGTTGCAAGA
TGTCACACCTTATCTTCACCTCTACGATTTGATGACGGGTAAAAAAGGTGAACGTGATATGCGTTTTGTCTTCATCGATG
AAATTCAAGATTACACGCCTTATGAATTGGCCTTCTTGAAGCTCCACTTCCCTAAGGCGCGCTTCACATTATTGGGCGAT
TTGAACCAAGCGATTTTCACTAAGGGTAACAGCACAAATCTCTTGCAACAAGTGCAACAATTATTTGATGCCCAAAATAC
AAAAGTGGTGCAATTAACGCGTTCATATCGGTCAACGCAACAAGTGACCGACTTTACCAAGGGCTTATTAAAAGGTGGCC
AAGCCATCGAAGCCTTCAACCGAGTTGGCGATAAACCAAACTTGATTGTGCGCCAATCAGAAGCTGAGTTAGTGGCTGAT
GTTAACCGCCAATTAGCCGCAAATGAAGCGGATGAATTATCGACGGCGATTATTACCAAGACATTGGTGCAAGCCCAAGA
ATTGACGAAGATGCTCAAGGAAACGGGAACCAAAGTCACCTTGATTCGTTCCGAAAACCAACGTTTAGCAGCCGGGACAT
TAGTGGTCCCAAGTTTCTTAGCTAAAGGTTTGGAATTCGATGCCATTATTGGCTGGCAAATCAGTGCCGCCAACTACAAT
CATGAAGATCAACGGCAATTGCTCTACACGATTTGTTCAAGAGCAATGCATCGCTTGACCTTGTTAGCCACTGACGCACT
CTCACCACTGATTGATAACGTCGATCCAGAAAAATATACATTAACAAAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(700-741)

AAA domain (AAA_19)

(214-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38ZE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

38.243

100

0.388