Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   ABVR75_RS00080 Genome accession   NZ_CP159464
Coordinates   16807..17682 (+) Length   291 a.a.
NCBI ID   WP_016264319.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain CBA3649     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 11807..22682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR75_RS00060 (ABVR75_00060) - 12690..13997 (-) 1308 WP_099735356.1 nucleobase:cation symporter-2 family protein -
  ABVR75_RS00065 (ABVR75_00065) rsmG 14399..15139 (+) 741 WP_353891391.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ABVR75_RS00070 (ABVR75_00070) noc 15139..16038 (+) 900 WP_353891392.1 nucleoid occlusion protein -
  ABVR75_RS00075 (ABVR75_00075) - 16050..16817 (+) 768 WP_016264318.1 AAA family ATPase -
  ABVR75_RS00080 (ABVR75_00080) spo0J 16807..17682 (+) 876 WP_016264319.1 ParB/RepB/Spo0J family partition protein Regulator
  ABVR75_RS00085 (ABVR75_00085) - 17701..17949 (+) 249 WP_016264320.1 DUF951 domain-containing protein -
  ABVR75_RS00090 (ABVR75_00090) ychF 17973..19073 (+) 1101 WP_226474322.1 redox-regulated ATPase YchF -
  ABVR75_RS00095 (ABVR75_00095) - 19091..19765 (+) 675 WP_226474323.1 DUF1129 domain-containing protein -
  ABVR75_RS00100 (ABVR75_00100) - 19802..20566 (+) 765 WP_076647655.1 prolyl oligopeptidase family serine peptidase -
  ABVR75_RS00105 (ABVR75_00105) - 20947..21615 (+) 669 WP_016264323.1 HAD hydrolase-like protein -
  ABVR75_RS00110 (ABVR75_00110) nrdI 21612..22079 (-) 468 WP_016264324.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32411.38 Da        Isoelectric Point: 9.8304

>NTDB_id=911518 ABVR75_RS00080 WP_016264319.1 16807..17682(+) (spo0J) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MVNKNGKGLGRGLEAVFSAFEGPNKNRADELVEEIALEDIRPNPYQPRKTFDEAALAELAASIKKSGVFQPIIVRKSING
YELIAGERRFRASKLAGKTTIPAITRQFDEEAMMEIAVLENLQREDLTPLEEAQAYDTLLKKLNLTQAEVSERLGKSRPY
IANYLRLLGLPADVKQLLQEGQLSMGQARTLLSLKKKSQISALAKRTIAESLTVRQLEQLVNQMNQTKAAKVAKTKIKSP
YIQASENQLVDKFDTKVNIAMNSKGRGKIEIDYGTVEDLNRILALLDVNID

Nucleotide


Download         Length: 876 bp        

>NTDB_id=911518 ABVR75_RS00080 WP_016264319.1 16807..17682(+) (spo0J) [Latilactobacillus sakei subsp. sakei strain CBA3649]
ATGGTCAATAAAAATGGTAAAGGACTCGGTCGAGGACTCGAAGCTGTTTTTTCAGCATTTGAGGGACCCAATAAGAATCG
TGCGGATGAACTCGTTGAAGAGATTGCCCTCGAGGATATTCGTCCTAATCCTTATCAACCACGTAAAACGTTTGATGAAG
CGGCACTAGCGGAACTTGCTGCTTCCATTAAAAAATCAGGCGTTTTCCAACCGATTATTGTGCGTAAAAGCATTAATGGT
TACGAATTAATCGCTGGCGAACGTCGTTTCCGTGCTTCTAAATTAGCTGGCAAAACTACGATTCCAGCGATTACCCGTCA
ATTCGATGAAGAAGCGATGATGGAAATTGCAGTCTTGGAAAATCTTCAACGGGAAGATTTAACGCCGCTAGAAGAAGCGC
AAGCCTACGACACCCTTTTGAAGAAGTTAAACTTAACGCAAGCTGAAGTGTCAGAACGCTTAGGCAAGAGTCGCCCTTAC
ATTGCCAACTACTTACGCCTGTTGGGCTTGCCAGCAGATGTTAAGCAATTGTTGCAAGAAGGCCAACTCTCAATGGGACA
AGCACGGACGCTTTTATCATTGAAGAAAAAGAGTCAAATTAGCGCCCTCGCCAAGCGGACGATTGCCGAAAGTTTAACGG
TGCGCCAATTAGAACAACTCGTCAACCAAATGAATCAAACCAAAGCGGCTAAAGTCGCTAAGACTAAGATTAAATCACCT
TACATTCAAGCGAGTGAAAACCAATTAGTCGATAAATTCGATACCAAGGTCAATATTGCGATGAACAGTAAGGGCCGGGG
TAAAATCGAAATTGATTACGGCACGGTAGAGGATTTAAACCGAATCTTGGCTTTACTAGATGTCAATATTGATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(139-166)

HTH domain found in ParB protein (HTH_ParB)

(173-223)

ParB/Sulfiredoxin domain (ParB_N)

(33-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.629

86.254

0.368