Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   U0449_RS07145 Genome accession   NZ_CP139862
Coordinates   1391281..1392348 (+) Length   355 a.a.
NCBI ID   WP_000159554.1    Uniprot ID   A0A062WMA1
Organism   Streptococcus pneumoniae strain 05H0020-2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1386281..1397348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0449_RS07130 amiA3 1386804..1388783 (+) 1980 WP_000742234.1 peptide ABC transporter substrate-binding protein Regulator
  U0449_RS07135 amiC 1388850..1390346 (+) 1497 WP_000759905.1 ABC transporter permease Regulator
  U0449_RS07140 amiD 1390346..1391272 (+) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  U0449_RS07145 amiE 1391281..1392348 (+) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  U0449_RS07150 amiF 1392359..1393285 (+) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  U0449_RS07155 - 1393360..1394666 (-) 1307 Protein_1365 transposase -
  U0449_RS07160 treR 1394820..1395530 (-) 711 WP_050218962.1 trehalose operon repressor Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39490.09 Da        Isoelectric Point: 4.8727

>NTDB_id=911514 U0449_RS07145 WP_000159554.1 1391281..1392348(+) (amiE) [Streptococcus pneumoniae strain 05H0020-2]
MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSIDYRGQDL
TALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAIDYMNKVGIPDADRRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSETHWAK
TWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLAD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=911514 U0449_RS07145 WP_000159554.1 1391281..1392348(+) (amiE) [Streptococcus pneumoniae strain 05H0020-2]
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
CATTCGCGGCGTTTCCCTTGAACTAGTCGAAGGAGAAGTATTAGCCTTGGTAGGTGAGTCAGGATCAGGTAAATCTGTTT
TGACAAAGACCTTCACAGGTATGCTCGAAGAAAATGGTCGTATTGCCCAAGGTAGTATTGACTACCGTGGTCAGGACTTG
ACAGCTTTATCTTCTCACAAGGATTGGGAACAAATTCGTGGTGCTAAGATTGCGACTATCTTCCAGGACCCAATGACTAG
TTTGGACCCCATTAAAACAATTGGTAGTCAGATTACAGAAGTTATTGTAAAACACCAAGGAAAAACAGCTAAAGAAGCGA
AAGAATTGGCCATTGACTACATGAATAAGGTTGGCATTCCAGACGCAGATAGACGTTTTAATGAATACCCATTCCAATAT
TCTGGAGGAATGCGTCAACGTATCGTTATTGCGATTGCCCTTGCCTGCCGACCTGATGTCTTGATCTGTGATGAGCCAAC
AACTGCCTTGGATGTAACTATTCAAGCTCAGATTATTGATTTGCTAAAATCTTTACAAAACGAGTATCATTTCACAACAA
TCTTTATTACCCACGACCTTGGTGTGGTGGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCAGGAGAAATCGTTGAG
TATGGAACGGTTGAGGAAGTCTTCTATGACCCTCGCCATCCATATACATGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGATCTTTACTCAATCCCAGGAACACCTCCGTCACTTTATACTGACCTGAAAGGGGATGCTTTTGCCT
TGCGTTCTGACTACGCAATGCAGATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAGAGACACATTGGGCTAAA
ACTTGGCTTCTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTCCATGATAAGATCCGTGAAAA
AATGGGATTTGCCCATCTGGCTGACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WMA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

88.169

100

0.882
  amiE Streptococcus thermophilus LMG 18311

86.479

100

0.865
  amiE Streptococcus thermophilus LMD-9

86.479

100

0.865
  oppD Streptococcus mutans UA159

54.545

99.155

0.541