Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SUT_RS08555 Genome accession   NZ_AP025331
Coordinates   1807808..1808542 (-) Length   244 a.a.
NCBI ID   WP_155973865.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-183     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1802808..1813542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUT_RS08525 (GUT183_16510) rnpM 1802902..1803198 (-) 297 WP_024531898.1 RNase P modulator RnpM -
  SUT_RS08530 (GUT183_16520) nusA 1803215..1804357 (-) 1143 WP_024531897.1 transcription termination factor NusA -
  SUT_RS08535 (GUT183_16530) rimP 1804427..1804897 (-) 471 WP_024531896.1 ribosome maturation factor RimP -
  SUT_RS08540 (GUT183_16540) trmB 1805289..1805924 (-) 636 WP_155973863.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SUT_RS08545 (GUT183_16550) ccrZ 1805921..1806715 (-) 795 WP_024531894.1 cell cycle regulator CcrZ -
  SUT_RS08550 (GUT183_16560) - 1806765..1807811 (-) 1047 WP_120172159.1 ABC transporter permease -
  SUT_RS08555 (GUT183_16570) pptA 1807808..1808542 (-) 735 WP_155973865.1 ABC transporter ATP-binding protein Regulator
  SUT_RS08560 (GUT183_16580) - 1808605..1809018 (+) 414 WP_120172162.1 HIT family protein -
  SUT_RS08565 (GUT183_16590) - 1809020..1809313 (+) 294 WP_155973866.1 chemotaxis protein -
  SUT_RS08570 (GUT183_16600) - 1809363..1810559 (-) 1197 WP_024531889.1 LCP family protein -
  SUT_RS08575 (GUT183_16610) - 1810556..1811083 (-) 528 WP_155964972.1 GNAT family N-acetyltransferase -
  SUT_RS08580 (GUT183_16620) tsaE 1811076..1811516 (-) 441 WP_336512692.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SUT_RS08585 (GUT183_16630) - 1811748..1813412 (-) 1665 WP_024531886.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27144.62 Da        Isoelectric Point: 4.6926

>NTDB_id=91148 SUT_RS08555 WP_155973865.1 1807808..1808542(-) (pptA) [Streptococcus ruminantium strain GUT-183]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLIPYQGQILIDGQSLTQDAEHYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYGLNWEQAWNRAERLLKIFRLNEKLDWFPVHFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAIADLLALLEEEKAKGTSILMSTHVLDSAEKMCDRFVILHQGQVRAAGNLAELQATFAMEEASLSDIYLALTQE
GVVR

Nucleotide


Download         Length: 735 bp        

>NTDB_id=91148 SUT_RS08555 WP_155973865.1 1807808..1808542(-) (pptA) [Streptococcus ruminantium strain GUT-183]
ATGTTAGAAGTAAAAAATGTCACAGGTGGCTATGTAAATATCCCTGTCTTGAAAGATGTATCTTTTACAGTTGAAGATGG
ACAGTTGGTCGGCTTAATCGGTCTTAATGGTGCTGGAAAATCAACTACCATAAAGGAAATTATCGGCCTTTTGATACCCT
ATCAGGGACAAATTTTGATTGATGGCCAAAGCCTGACACAGGATGCAGAACATTATCGAAAAAAGATTGGTTTTATCCCA
GAGACGCCTAGTTTATATGAAGAGTTAACTCTCAAAGAGCATTTGGAAGTTGTTGCTATGGCTTACGGTTTGAATTGGGA
GCAGGCTTGGAACCGAGCAGAAAGGTTGCTGAAGATTTTTCGTCTGAACGAAAAGTTGGATTGGTTCCCTGTTCATTTTT
CAAAAGGAATGAAGCAAAAAGTGATGATTATCTGTGCATTTATGGTAGAACCAAGCCTGTTGATCGTTGACGAGCCTTTT
TTAGGTTTGGATCCGGTAGCTATTGCCGATTTGCTTGCTCTCCTAGAGGAAGAAAAAGCAAAGGGAACTTCTATCTTGAT
GTCAACGCATGTTCTGGATTCGGCTGAAAAAATGTGTGATCGGTTTGTTATTCTCCACCAAGGGCAGGTACGAGCAGCTG
GAAATTTGGCTGAGCTACAGGCAACTTTTGCTATGGAAGAGGCCAGTCTCAGTGATATTTATCTTGCCTTGACGCAAGAG
GGAGTGGTCAGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

73.222

97.951

0.717
  pptA Streptococcus thermophilus LMD-9

72.385

97.951

0.709

Multiple sequence alignment