Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   U0449_RS05185 Genome accession   NZ_CP139862
Coordinates   1026495..1027253 (-) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 05H0020-2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1021495..1032253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0449_RS05160 pth 1021528..1022097 (-) 570 WP_000163933.1 aminoacyl-tRNA hydrolase -
  U0449_RS05165 ychF 1022168..1023283 (-) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  U0449_RS05170 - 1023367..1023561 (-) 195 WP_000285194.1 DUF951 domain-containing protein -
  U0449_RS05175 dnaN 1023626..1024762 (-) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  U0449_RS05180 dnaA 1024921..1026282 (-) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  U0449_RS05185 spo0J 1026495..1027253 (-) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator
  U0449_RS05190 htrA 1027311..1028492 (-) 1182 WP_000681601.1 S1C family serine protease Regulator
  U0449_RS05195 rlmH 1028675..1029154 (+) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  U0449_RS05205 comC/comC1 1029436..1029561 (+) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  U0449_RS05210 comD/comD1 1029582..1030907 (+) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  U0449_RS05215 comE 1030904..1031656 (+) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=911479 U0449_RS05185 WP_000410383.1 1026495..1027253(-) (spo0J) [Streptococcus pneumoniae strain 05H0020-2]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=911479 U0449_RS05185 WP_000410383.1 1026495..1027253(-) (spo0J) [Streptococcus pneumoniae strain 05H0020-2]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGTTTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504