Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABWI18_RS05870 Genome accession   NZ_CP159455
Coordinates   1162821..1163450 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain S6aCHROMc     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1157821..1168450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWI18_RS05855 (ABWI18_05860) helD 1158063..1160117 (-) 2055 WP_001297106.1 DNA helicase IV -
  ABWI18_RS05860 (ABWI18_05865) yccF 1160240..1160686 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABWI18_RS05865 (ABWI18_05870) yccS 1160696..1162858 (+) 2163 WP_000875015.1 YccS family putative transporter -
  ABWI18_RS05870 (ABWI18_05875) sxy/tfoX 1162821..1163450 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABWI18_RS05875 (ABWI18_05880) sulA 1163669..1164178 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABWI18_RS05880 (ABWI18_05885) ompA 1164535..1165587 (+) 1053 WP_000750419.1 porin OmpA -
  ABWI18_RS05885 (ABWI18_05890) matP 1165663..1166115 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABWI18_RS05890 (ABWI18_05895) ycbZ 1166301..1168061 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=911449 ABWI18_RS05870 WP_000839153.1 1162821..1163450(-) (sxy/tfoX) [Escherichia coli strain S6aCHROMc]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=911449 ABWI18_RS05870 WP_000839153.1 1162821..1163450(-) (sxy/tfoX) [Escherichia coli strain S6aCHROMc]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1