Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   U0447_RS05480 Genome accession   NZ_CP139861
Coordinates   1040334..1041092 (+) Length   252 a.a.
NCBI ID   WP_000410378.1    Uniprot ID   A0A064C0A8
Organism   Streptococcus pneumoniae strain 16H2017-2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1035334..1046092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0447_RS05450 comE 1035931..1036683 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  U0447_RS05455 comD/comD1 1036680..1038005 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  U0447_RS05460 comC/comC1 1038026..1038151 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  U0447_RS05470 rlmH 1038433..1038912 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  U0447_RS05475 htrA 1039095..1040276 (+) 1182 WP_000681601.1 S1C family serine protease Regulator
  U0447_RS05480 spo0J 1040334..1041092 (+) 759 WP_000410378.1 ParB/RepB/Spo0J family partition protein Regulator
  U0447_RS05485 dnaA 1041305..1042666 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  U0447_RS05490 dnaN 1042825..1043961 (+) 1137 WP_000581163.1 DNA polymerase III subunit beta -
  U0447_RS05495 - 1044026..1044220 (+) 195 WP_000285194.1 DUF951 domain-containing protein -
  U0447_RS05500 ychF 1044304..1045419 (+) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  U0447_RS05505 pth 1045490..1046059 (+) 570 WP_000163932.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29153.50 Da        Isoelectric Point: 9.0667

>NTDB_id=911429 U0447_RS05480 WP_000410378.1 1040334..1041092(+) (spo0J) [Streptococcus pneumoniae strain 16H2017-2]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=911429 U0447_RS05480 WP_000410378.1 1040334..1041092(+) (spo0J) [Streptococcus pneumoniae strain 16H2017-2]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C0A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.593

100

0.508