Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U0541_RS10350 Genome accession   NZ_CP139850
Coordinates   1789543..1790157 (+) Length   204 a.a.
NCBI ID   WP_326972408.1    Uniprot ID   -
Organism   Citrobacter freundii strain UKJ86     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1784543..1795157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0541_RS10330 (U0541_10335) - 1784912..1786672 (-) 1761 WP_003035878.1 AAA family ATPase -
  U0541_RS10335 (U0541_10340) matP 1786858..1787310 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  U0541_RS10340 (U0541_10345) ompA 1787400..1788458 (-) 1059 WP_003836839.1 porin OmpA -
  U0541_RS10345 (U0541_10350) sulA 1788816..1789325 (-) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  U0541_RS10350 (U0541_10355) sxy/tfoX 1789543..1790157 (+) 615 WP_326972408.1 TfoX/Sxy family DNA transformation protein Regulator
  U0541_RS10355 (U0541_10360) yccS 1790135..1792288 (-) 2154 WP_103848632.1 YccS family putative transporter -
  U0541_RS10360 (U0541_10365) - 1792307..1792753 (-) 447 WP_003035892.1 YccF domain-containing protein -
  U0541_RS10365 (U0541_10370) helD 1792879..1794933 (+) 2055 WP_326972409.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23302.68 Da        Isoelectric Point: 8.2305

>NTDB_id=911252 U0541_RS10350 WP_326972408.1 1789543..1790157(+) (sxy/tfoX) [Citrobacter freundii strain UKJ86]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNTPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVEGIHEAALPATRRQELVEWVSSLTPESGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=911252 U0541_RS10350 WP_326972408.1 1789543..1790157(+) (sxy/tfoX) [Citrobacter freundii strain UKJ86]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATACTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGAGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAATCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686